Oh, I see what your saying. This is a python question.
from sys import argv
c_arg1 = argv[1]
c_arg2 = argv[2]
from pymol import cmd, stored
def align_heme(arg1, arg2 ):
cmd.load(arg1)
cmd.load(arg2)
cmd align(arg1,arg2)
#cmd.create(obj1, arg1) #There is no need
Hello,
I am making a script that loads in two molecules as arguments in the
command line. I want to then align these molecules and make a pretty
picture of the molecules that were input as arguments in the comand line
but I am not sure how to name them as objects. I don't know how to select
the ne
Greetings,
I am happy to report that PyMOL will be used in a structural
biolnformatics lab of
an upcoming Coursera course, Bioinformatic Methods 2, taught by Nicholas Provart
of the University of Toronto. The enrollment for these courses can typically be
in the tens of thousands or more. If you wo
Richard,
The PyMOL team was just discussing this a few days back. Sadly, there
is no way to do this using standard labels.
If you have Incentive PyMOL v1.7 you can use the new callout command
(http://pymol.org/dsc/dokuwiki/doku.php?id=command:callout). Otherwise
you can use the pseudoatom
(http:/
Hi,
Is there an easy way to change the label on a distance object to some
arbitrary string?
I would like a line connecting two atoms with an arbitrary label
at the midpoint between the two atoms.
for example:
#make atom pair selection
distance d, (id 3651, id 3691) # actual distance = 2.00
#rep
Dear Stefan,
On Tue, 2014-02-04 14:44 EST, Stefan Ivanov
wrote:
> Dear Pymolers,
>
> I tried to run ncont on a pdb structure and got a .ncont file as output,
> but the only thing the file contains is an error message (see below). I
> tried copying default.def into the working directory, but c
Dear Pymolers,
I tried to run ncont on a pdb structure and got a .ncont file as output, but
the only thing the file contains is an error message (see below). I tried
copying default.def into the working directory, but couldn't get the darn thing
to work. If someone can help I'd appreciate it.
