Re: [PyMOL] Real-time black and white view possible?

2014-06-12 Thread Martin Hediger
Impressive, how did you figure this out? Martin On 12.06.14 23:18, Shiven Shandilya wrote: Hi Martin, I guess you can do this using modified GLSL shaders … Two examples I posted on the PyMOL wiki a while ago: http://www.pymolwiki.org:/index.php/GLSL_Shaders Best, Shiven On Jun 12, 2

Re: [PyMOL] Real-time black and white view possible?

2014-06-12 Thread Shiven Shandilya
Hi Martin, I guess you can do this using modified GLSL shaders … Two examples I posted on the PyMOL wiki a while ago: http://www.pymolwiki.org:/index.php/GLSL_Shaders Best, Shiven On Jun 12, 2014, at 5:10 PM, Martin Hediger wrote: > Hi all > > I wonder if it's possible to have something

[PyMOL] Real-time black and white view possible?

2014-06-12 Thread Martin Hediger
Hi all I wonder if it's possible to have something like ray_trace_mode, 2 (i.e. black and white with outlines) but in the interactive view. Also, is it possible to have part of the structure in color (say some active site amino acids) and the rest in black and white? Thanks for help Martin --

[PyMOL] Segfault while using Tkinter Slider

2014-06-12 Thread Berk Ekmekci
Hello, I've been developing a PyMOL plugin using Tkinter, and encountered an issue with the slider (scale) widget and an associated variable leading way to a segfault as the slider value is changed. Below is a segment of the code I've minimized as much as reasonable while still giving the error. T

Re: [PyMOL] Write map from list of coordinates.

2014-06-12 Thread Thomas Holder
Hi Gian, yes, the from_numpy method is new in PyMOL 1.7. But the underlying import functionality is not new, so you could basically copy the code from that method and create a valid brick instance yourself. Have a look at: https://sourceforge.net/p/pymol/code/HEAD/tree/trunk/pymol/modules/chemp

Re: [PyMOL] Write map from list of coordinates.

2014-06-12 Thread Gianluca Santoni
Hi everyone, I was following this instructions to load a nparray as a map, but I get the error: class Brick has no attribute 'from_numpy' Is it a new feature in chempy, or am I missing something? Cheers, Gian On 2/3/14 3:01 AM, Thomas Holder wrote: > Hi Esben, > > On 02 Feb 2014, at 12:27, Esbe