On 20/06/14 17:45, Jason Vertrees wrote:
Hi Suzanne,
Everything should look and act exactly like it has in the past, including the
address.
Cheers,
-- Jason
Hi,
I just saw some weirdness when I try to access
https://www.pymolwiki.org/
That doesn't look like pymol stuff.
Cheers,
Hi,
I was comparing two very similar structures and I got the following results:
align pdb1, pdb2, cycles=0
0.38
align pdb1, pdb2 and name ca, cycles=0
0.05
align pdb1, pdb2 and name ca+cb+c+n, cycles=0
0.07
align pdb1, pdb2 and name ca+cb+c+n+o, cycles=0
9.8
I wonder why the addition of
Hi Cedric,
you probably include random waters with name o. Try adding ... and polymer
to your selection string.
Cheers,
Thomas
On 20 Oct 2014, at 11:16, Cedric patrick.coss...@inbox.com wrote:
Hi,
I was comparing two very similar structures and I got the following results:
align
Hi Thomas,
Thank you, I tried that and it is now 1.9A, still seems high when the overall
RMSD is 0.38 !
But, that is definitely something I will keep in mind in the future when
calculating the RMSD.
Cedric
-Original Message-
From: thomas.hol...@schrodinger.com
Sent: Mon, 20 Oct
Hi Cedric,
I suggest to create an alignment object, then you see which atoms got paired.
http://pymolwiki.org/index.php/Align#Alignment_Objects
Hope that helps.
Cheers,
Thomas
On 20 Oct 2014, at 11:44, Cedric patrick.coss...@inbox.com wrote:
Hi Thomas,
Thank you, I tried that and it
Markus, I'll create an account for you.
Cheers,
Thomas
On 20 Oct 2014, at 14:33, Markus Heller mhel...@cdrd.ca wrote:
Would if I could.
How do I sign up for the PyMOLWiki?
THanks
Markus
-Original Message-
From: Thomas Holder [mailto:thomas.hol...@schrodinger.com]
Sent:
Hi,
I updated pymol to r4098 and now it crashes on launch. I'm assuming that
it was something I did, but I can't figure out what.
Thanks for your help,
Matt
$ pymol
Traceback (most recent call last):
File /usr/local/lib/python2.7/dist-packages/pymol/__init__.py, line
71, in module
Hi Justin -
I see this same “weirdness using the https protocol. If you remove the ’s’
from ‘https’ in your URL, however, it will load properly. It must be on a
shared server that has something goofy happening with the handling of https
traffic. I think Jason is still the admin for the
Hi Matt,
looks like a partial build after header changes. Please remove the build
directory and rebuild (our setup.py is not tracking header dependancies when
doing incremental builds).
Thanks,
Thomas
On 20 Oct 2014, at 19:10, Matthew Baumgartner mp...@pitt.edu wrote:
Hi,
I updated pymol
