This occurs when retain_order is set before loading a protein.
You have to:
unset retain_order
Then load your protein again.
You might say: "I didn't set retain_order". This is likely true. Some very
popular pymol plugins set it when loaded, most famously the autodock plugin.
-David
On Tue, Jan 27, 2015 at 2:58 AM, Biao Ma <jackyma1...@gmail.com> wrote:
> Hi, pymol users.
>
> I want to change same residues to another one.
>
> I try to do it refer to following site, I changed TRY128 to PHE128,
> http://www.pymolwiki.org/index.php/Mutagenesis
>
> But when I save the modified molecular to PDB file, the sequence of
> residue is out of turn.
>
> Who can tell me how to fix this problem?
>
> Thank a lot.
>
> Jacky
>
> The following is a part of PDB.(the original pdb file is start from 124)
>
> ATOM 1 N GLY A 124 -9.861 12.581 5.804 1.00 1.00
> N
> TER 2 GLY A 124
> ATOM 3 N PHE A 128 -12.196 10.147 0.017 1.00 0.00
> N
> TER 4 PHE A 128
> ATOM 5 CA GLY A 124 -10.625 12.191 4.609 1.00 1.00
> C
> TER 6 GLY A 124
> ATOM 7 CA PHE A 128 -11.765 8.834 0.485 1.00 0.00
> C
> TER 8 PHE A 128
> ATOM 9 C GLY A 124 -9.855 12.324 3.299 1.00 1.00
> C
> TER 10 GLY A 124
>
> [image: Inline image 1]
>
>
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leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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