[PyMOL] creating selections without launching GUI

2015-03-08 Thread Irem Altan
Hi, I have recently started to play with PyMOL and using python scripts. Is it possible to create a new selection without launching the GUI? I want to manipulate the selection and calculate the surface area, and then delete it. I will be doing this for a lot of proteins so I would like to be

Re: [PyMOL] creating selections without launching GUI

2015-03-08 Thread Osvaldo Martin
Hi Irem, You could use __main__.pymol_argv = ['pymol','-qc'] the c suppress the GUI. Cheers, Osvaldo. On Sun, Mar 8, 2015 at 9:32 PM, Irem Altan irem.al...@duke.edu wrote: Hi, I have recently started to play with PyMOL and using python scripts. Is it possible to create a new

[PyMOL] ray trace mode

2015-03-08 Thread Matzov Donna
Hi pymol users How can I trace my model (like when using set ray_trace_mode, 1), without tracing the mesh around it? Thanks! Donna -- Dive into the World of Parallel Programming The Go Parallel Website, sponsored by