[PyMOL] Unrecognized space group P 21/c in CIF file

2015-05-01 Thread Brenton Horne
Hi, Recently I uploaded a CIF file to COD (http://www.crystallography.net/cod/1519159.html) that I have managed to successfully render in Jmol, Avogadro and CCDC's Mercury, but for some reason PyMOL gives me this error whenever I load it in it: > Symmetry-Error: Unrecognized space group symbol

Re: [PyMOL] cylinder fuzzy color when ray traced

2015-05-01 Thread Tsjerk Wassenaar
Hey Doug, Does set ray_trace_mode, 3 do what you want? Cheers, Tsjerk On Fri, May 1, 2015 at 5:20 PM, Douglas Kojetin wrote: > Hi All, > > I am trying to highlight a specific residue (black color) in a helix > (orange color) displayed in cylinder mode. When I perform ray tracing, the > bla

[PyMOL] cylinder fuzzy color when ray traced

2015-05-01 Thread Douglas Kojetin
Hi All, I am trying to highlight a specific residue (black color) in a helix (orange color) displayed in cylinder mode. When I perform ray tracing, the black region becomes a fuzzy gradient on the ends. Is there a ray tracing setting to make a crisp, sharp transition from orange to black to o