Hi All
I have a task in hand where need your suggestions and comments
Task is to print list of solvent exposed surface amino acids or protein
surface amino acids .
By searching I had found this script
http://www.pymolwiki.org/index.php/FindSurfaceResidues
which select the residues on the
Hi Vinod
The exposed residues are stored in the selection “exposed_res_02”. You can
iterate http://www.pymolwiki.org/index.php/Iterate this selection to get
several properties like the residues names, for example the command:
iterate exposed_res_02, resn
will return the name of the residues,
Hej,
depends on what you want, single atoms or residues. You can output the
available surface are for every atom and then decide which ones are
accessible based on your cutoff stringency.
Here is some code that will print the info in PyMOL, alternatively you
could modify it to print to a file
