Re: [PyMOL] secondary structure disappears

2015-07-23 Thread H. Adam Steinberg
Big thank you to all of you! I really need to find some time to better learn code. :/ On Jul 23, 2015, at 4:36 PM, Sampson, Jared jared.samp...@nyumc.org wrote: I'm posting the following solution on behalf of Thomas Holder (whose sourceforge.net http://sourceforge.net/ email address is

Re: [PyMOL] secondary structure disappears

2015-07-23 Thread Sampson, Jared
I'm posting the following solution on behalf of Thomas Holder (whose sourceforge.nethttp://sourceforge.net email address is currently down due to SF server issues), to ensure it is added to this thread in the archive: This is due to chain identifier conflict. He's merging 6 models with

[PyMOL] secondary structure disappears

2015-07-23 Thread H. Adam Steinberg
Hi All,If you fetch 3ow9 in PyMOL,split_states to get all six of the strands,select all, then copy to object,You only get the two strands, not all six, I need all six to be duplicated into one object so I can make a long amyloid fibril.If I open the pdb file for 3ow9 in text edit and remove all

Re: [PyMOL] secondary structure disappears

2015-07-23 Thread H. Adam Steinberg
The secondary structure is only there for the first set of strands, and then that is used for the other strands when you split_states, but how do I change that entry so it applies to the other strands? Here is that entry from the file that I attached: SHEET1 A 2 LEU A 2 PHE A 5 0