[PyMOL] Common atoms in two selections (and their indices)

Hi Thomas e.a., Given two selections, would there be an easy way to 1. find the atoms which are both in selection 1 and 2, and the indices of those in the selections and 2. find the matching atoms in the two selections, like align does, and the indices of those in the selections Thanks,

Re: [PyMOL] superimposing and aligning

Or cealign ! On Tue, Oct 20, 2015 at 4:14 PM, Osvaldo Martin wrote: > Hi Raag, > > You can use align or super > , the main difference is that >

[PyMOL] Interrupting slow commands

Is there any way to interrupt slow commands without killing pymol? For instance, if you accidentally add an extra 0 to the raytracing resolution. On a related note, it would be nice to programmatically access the progress bar and abort button from scripts and plugins (I know it has been discussed

[PyMOL] How to make a movie that show competitive bindings between proteins?

Dear all, I wish to make a movie which shows the following scenary: firstly two subunits of a complex form the complex, and then another protein appears, competitively bind to one subunit of that complex and substitutes the other subunit. I guess only pymol might not be able to do these.

Re: [PyMOL] GROMACS trajectories (Timofey Tyugashev)

Thank you for reply. xtc trajectories do work. Maybe the first time the problem occurred because I was using PyMOL installed from Linux Mint repository. Now I use SVN one. --