Vaheh,
You can modify the b-factor column, and color by b-factor. I have used
various value-to-bfactor scripts, with different measures of alignment
similarity.
The one problem I've had is extending the Ca color to the rest of the
residue in stick mode.
Jed
On Oct 28, 2015 3:34 PM, "Oganesyan, Vah
Colleagues,
Was wondering if there is a functionality built in PyMOL for coloring of the
molecule based on sequence identity/similarity? This topic was discussed
briefly in 2007 and the answer was from Robert Campbell suggesting using his
scripts. Seems to be a good tool to have for anyone.
Hi Tsjerk, Spencer, Osvaldo,
cmd.get_raw_alignment() might be what you are looking for.
http://pymolwiki.org/index.php/Get_raw_alignment
Cheers,
Thomas
On 27 Oct 2015, at 12:49, Spencer Bliven wrote:
> Tsjerk–
>
> You might be able to extract the ids of the aligned residues from an
> alig
Hello:
Does anybody know whether Nvidia GTX980Ti support Pymol active stereo
3D? I saw someone said that some GTX graphic card may also work, but I
am not sure for this one.
Thx a lot
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