[PyMOL] can we clone representation?

[Albert]

Hello:

I've shown an object as cartoon and displaced sticks with various 
colors. I am just wondering, can we clone all representation from object 
1 to object 2 with some command in Pymol? As far as I known, this is 
possible in VMD:

http://www.ks.uiuc.edu/Research/vmd/plugins/clonerep/

Thank you very much

Albert

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Re: [PyMOL] on async

[Osvaldo Martin]

Hi Smith,

That argument controls if the command runs asynchronously or not. If asyn=0
the command has to finish before the next command is executed if async = 1
the command is going to keep working (until finish) while the next commands
are executed.

Cheers,
Osvaldo.

On Sat, Nov 21, 2015 at 12:11 PM, Smith Liu  wrote:

Dear All,
>
> Will you please tell me the meaning of "async"in pymol script?
>
> Smith
>
>
>
>
>
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Re: [PyMOL] Pymol for inorganic chemists - dealing with bonds

[Osvaldo Martin]

Hi,

I think the options that Andreas propose are very good for your needs.
Nevertheless, if you what to try, another option will be to use PyMOL CGO


Cheers,

Osvaldo.

On Fri, Nov 20, 2015 at 4:10 PM, Andreas Warnecke <
4ndreas.warne...@gmail.com> wrote:

Hej Henrique,
>
> not an inorganic chemist here, but some suggestions anyway:
>
> Metallic centers should be displayable as spheres using the *show*, or
> *show_as spheres* commands. The radius can be altered using: *set
> sphere_scale, value, selection*
>
> The bonds are more problematic. Pymol has some options for editing bonds,
> but a display as dotted line doesn't exist as such to my knowledge (maybe
> something to expand on in future PyMOL versions?). What you could try is to
> use distance objects instead, but depending on the complexity of the model
> this may be applicable, or not. Note that you may have to unbond the
> metallic center to remove any existing PyMOL bonds for the display.
> http://pymolwiki.org/index.php/Distance
>
> The distance objects can be colored and there are several settings related
> to dashes, e.g. radius, shapes, gaps etc. etc (use the settings-->edit
> all--> and filter by "dash").
>
> Hope this may help, otherwise there may be other approaches,
>
> Cheers,
>
> Andreas
>
>
>
> On Thu, Nov 19, 2015 at 3:54 PM, Henrique C. S. Junior <
> henrique...@gmail.com> wrote:
>
>> Dear Pymol users,
>> As an inorganic chemist, to represent metallic centers and ligands in a
>> comprehensive way is very important. I've tried to select my metallic
>> centers and the atoms bonded directly to them, change this selection to
>> ball and stick and keep all the rest as wireframe. Some bonds changed to
>> sticks, some others not (and they are not changing, even if I try again).
>> What I want to do is this:
>> * Represent my metallic centers as spheres (maybe tweaking the radius a
>> little)
>> * Change bonds directly connected to my metallic centers to dashes or
>> dots (and change the colors of this dashes/dots if possible).
>> Any help is much appreciated.
>>
>> --
>> *Henrique C. S. Junior*
>> Químico Industrial - UFRRJ
>> Mestrando em Química Inorgânica - UFRRJ
>> Centro de Processamento de Dados - PMP
>>
>>
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[PyMOL] on async

[Smith Liu]

Dear All,


Will you please tell me the meaning of "async"in pymol script?


Smith--
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