Re: [PyMOL] The Wiki appears outdated or in error

2016-03-22 Thread Sampson, Jared M.
Hi Jim - The COLLADA exporting code was incorporated into Open Source PyMOL starting with 1.7.3.2 (SVN 4097), but I'm not sure when it made it into Incentive PyMOL, so if that's what you're using, 1.7.4 might be just barely too early to have that capability. You could try saving as VRML2,

[PyMOL] get_bond bond counting in PyMol

2016-03-22 Thread Vijay Masand
Dear PyMol Users While working with a ligand in a pdb file, which I saved in .mol2 file format, I used following command: get_bond stick_transparency, * I observed following outcome in Pymol. Getting: stick_transparency for 63 bonds in object