Re: [PyMOL] on the alignment command

2016-04-15 Thread Sampson, Jared M.
Hi Smith - `Align` takes selections as arguments, so something like the following should work. align protA and chain A+B+C, protB and chain E+F+G You could also use `super` or `cealign` instead of align, although with cealign, you should reverse the order of the arguments to achieve the same

Re: [PyMOL] VRML2 export and edu pymol

2016-04-15 Thread Hagemeister, Fred
Thanks, I wasn't even aware of that route at all. Timewise, I'll do the conversions myself this time. However, we have a chem lab where we could do the Lenix Byam all. That's awesome, thanks! Cheers, Fred Sent via my mobile device > On Apr 15, 2016, at 8:12 AM, Norwid Behrnd

Re: [PyMOL] VRML2 export and edu pymol

2016-04-15 Thread Norwid Behrnd
For this purpose I would suggest to use the open-source version of pymol, provided within the repositories of Xubuntu (14.04 LTS) or Debian 8 testing. Their builds are based on version 1.7.0 or 1.7.2, respectively and with an VRML2 UTF8 export. Subsequently, I would follow step-wise