Re: [PyMOL] Structural matching of Side-chain selection

Hi James, The "super" method requires CA atoms in the selection because it aligns based on the backbone trace. You should use "rms" or "rms_cur" to get a side chain RMSD. Cheers, Thomas On 12 Jul 2016, at 10:10, James Starlight wrote: > Dear pymol users! > > I

Re: [PyMOL] Scripting in Pymol (+)

Hi James - For the first part, you should use split_states and super or cealign, as in my response to one of your emails last month. https://sourceforge.net/p/pymol/mailman/message/35156097/ Then, once you have aligned all the trajectory structures (let's say they're called traj_01 through