Hi Dd H -
`cmd.set` is the wrong command to use here. (It's for changing settings, not
for going through states, although some settings can be applied to only a
specific state).
Instead, you should use `cmd.frame(i)` to move to that frame (state) number.
Note that the `width` and `height`
Hi soumi -
A command-line version of what David said is the following:
save new_complex.pdb, protein_selection or dna_selection
where `protein_selection` and `dna_selection` include all the atoms you want to
have in the final PDB. They could be object names if you have each protein and
the
