[PyMOL] angle between the loops

2017-06-12 Thread chemocev marker
Hi Is there any script that can measure the angle between the loop and or can define plane on the loop?? best Jiri -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http

Re: [PyMOL] Selection of chains based on PDB header

2017-06-12 Thread Thomas Holder
Hi Julian, A one-liner to create chain selections looks like this: for c in cmd.get_chains(): cmd.select("chain_" + c, "chain " + c) PyMOL doesn't provide access to the PDB header fields. In principle PyMOL provides a way to access everything inside mmCIF files, see: https://pymolwiki.org/inde

[PyMOL] Selection of chains based on PDB header

2017-06-12 Thread Julian Reitz
Dear all, I have a pdb-file with multiple chains (5N61). Is there an easy way to create selections for all the chains that are defined in the pdb-header (A to U) without doing it manually for every chain (select A, chain A)? Is it also possible to use the MOLECULE information from the header to n