Hi Neena, If you give a different selection, then phi_psi will give you a list of phi/psi angles for all residues in the selection.
For example if your protein object is called "obj_1", then typing phi_psi obj_1 will provide a list of phi_psi values to the terminal: PyMOL>phi_psi obj_1 LYS-3: ( -63.3, -75.6 ) GLY-4: ( -62.6, -32.9 ) GLU-5: ( -31.7, -58.7 ) GLU-6: ( -57.3, -23.4 ) LEU-7: ( -74.7, -18.6 ) PHE-8: ( -106.0, 6.4 ) THR-9: ( -59.8, -16.1 ) GLY-10: ( -140.4, -166.5 ) or you can assign the list to a dictionary variable with: p = cmd.phi_psi('obj_1') where p will be a dictionary with keys representing the residue numbers and pointing to a list of the phi/psi values for that residue. Cheers, Rob -- Robert L. Campbell, Ph.D. Assistant Professor, Dept. of Biomedical & Molecular Sciences, Queen's University, Kingston, ON K7L 3N6 Canada <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc On Sat, 2020-05-09 11:08 -0400, Neena Susan Eappen <neenasusan...@gmail.com> wrote: > Hi Jarrett, > > Thank you for your reply. However, that command gives phi and psi > angles for only one atom (when only one atom is selected). Is there > one command we can use to extract all phi and psi angles? > > Thanks, > Neena > > > > On Mon, 27 Apr 2020 at 22:01, Jarrett Johnson < > jarrett.john...@schrodinger.com> wrote: > > > Hi Neena, > > > > Is this command sufficient? > > > > https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fpymol.org%2Fdokuwiki%2Fdoku.php%3Fid%3Dcommand%3Aphi_psi&data=02%7C01%7Crobert.campbell%40queensu.ca%7C220f11d984f74518dfe208d7f42b243e%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C637246338451090438&sdata=Y8U07iXlCYJ%2BE0GN2Oh04QSE7n68NPH5d2fc%2BaUhdSk%3D&reserved=0 > > > > Best, > > Jarrett J > > > > On Mon, Apr 27, 2020 at 9:45 PM Neena Susan Eappen < > > neenasusan...@gmail.com> wrote: > > > >> Hello PyMOL users, > >> > >> How to extract all peptide dihedral angles (phi and psi) in PyMOL? > >> > >> Many thanks, > >> Neena > >> _______________________________________________ > >> PyMOL-users mailing list > >> Archives: > >> https://can01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.mail-archive.com%2Fpymol-users%40lists.sourceforge.net&data=02%7C01%7Crobert.campbell%40queensu.ca%7C220f11d984f74518dfe208d7f42b243e%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C637246338451090438&sdata=%2F%2F%2BSyfR20FyqY2GFMhZVbBe0CHtQuoSLCIUMsBHgoLs%3D&reserved=0 > >> Unsubscribe: > >> https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fpymol%2Flists%2Fpymol-users%2Funsubscribe&data=02%7C01%7Crobert.campbell%40queensu.ca%7C220f11d984f74518dfe208d7f42b243e%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C637246338451090438&sdata=gcqmQ9A%2BOEJMPVf3ubqWWGEh6DzZv95XVXXJULabe2w%3D&reserved=0 > >> > > > > > > > > -- > > > > *Jarrett Johnson* | Senior Developer > > [image: Schrodinger Logo] > > <https://can01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.schrodinger.com%2F&data=02%7C01%7Crobert.campbell%40queensu.ca%7C220f11d984f74518dfe208d7f42b243e%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C637246338451090438&sdata=QViEhtZ0MwQ2h0DLrVEcSdR%2FBW5DNGRF7kWbSDQIAaM%3D&reserved=0> > > _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe