Thank you Tamas, for suggesting that great MDanalysis tool, will try it out!
Thank you Rob, yes that command worked (phi_psi obj), it gave a list of all backbone dihedral angles! On Sat, 9 May 2020 at 12:45, Tamas Hegedus <biohege...@gmail.com> wrote: > Hi, > > For this type of analysis I would use MDAnalysis (Python): > https://www.mdanalysis.org/ > > https://www.mdanalysis.org/mdanalysis/documentation_pages/analysis/dihedrals.html > > Tamas > > On 5/9/20 5:08 PM, Neena Susan Eappen wrote: > > Hi Jarrett, > > Thank you for your reply. However, that command gives phi and psi angles > for only one atom (when only one atom is selected). Is there one command we > can use to extract all phi and psi angles? > > Thanks, > Neena > > > > On Mon, 27 Apr 2020 at 22:01, Jarrett Johnson < > jarrett.john...@schrodinger.com> wrote: > >> Hi Neena, >> >> Is this command sufficient? >> >> https://pymol.org/dokuwiki/doku.php?id=command:phi_psi >> >> Best, >> Jarrett J >> >> On Mon, Apr 27, 2020 at 9:45 PM Neena Susan Eappen < >> neenasusan...@gmail.com> wrote: >> >>> Hello PyMOL users, >>> >>> How to extract all peptide dihedral angles (phi and psi) in PyMOL? >>> >>> Many thanks, >>> Neena >>> _______________________________________________ >>> PyMOL-users mailing list >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> Unsubscribe: >>> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe >> >> >> >> -- >> >> *Jarrett Johnson* | Senior Developer >> [image: Schrodinger Logo] <https://www.schrodinger.com/> >> > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
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