[PyMOL] Consistent coloring between sticks of sidechains and cartoon backbones in spectrum coloring

2020-05-20 Thread Chen, Qiang
Hi, Pymol-users I have my protein shown as cartoon and colored with spectrum. Now I would like to show several residues at different places with sticks representation. when I tried, I can not get the color consistent between the backbone CA and the carbons on the sidechain. I searched the arch

Re: [PyMOL] [EXTERNAL] How to compute the interface surface between ligand and protein?

2020-05-20 Thread Mooers, Blaine H.M. (HSC)
Hi Thomas, If you display the SASA of the protein in PyMOL's viewport, you will see that it and that of the ligand have huge overlaps How do you define the interface in such a situation and how do you interpret it? The interface of the molecular surfaces seems easier to interpret. Best regar

[PyMOL] PyMOL 2.4 released

2020-05-20 Thread Thomas Holder
Greetings, We are happy to announce the release of PyMOL 2.4. Download ready-to-use bundles from https://pymol.org/ or update your installation with "conda install -c schrodinger pymol". Highlights: - Incentive PyMOL only: - Support for https://lookingglassfactory.com/schrodinger - Pi-Pi