[PyMOL] Automatic Video generation

Hello everybody, I am doing molecular simulation using GROMACS program and I visualize the output (.pdb) using Pymol. I am inserting 4000 molecule inside a box, one molecule at a time, and after every insertion I convert the output into a .pdb file so at the end I have 4000 .pdb file. I want to

Re: [PyMOL] volume representation is extremely dark colored

Thanks Thomas and Akbar! "set precomputed_lighting" did the trick and everything looks normal now. Vitali -Original Message- From: Thomas Holder Sent: Wednesday, May 27, 2020 2:24 AM To: Stanevich, Vitali [JRDUS] Cc: Mooers, Blaine H.M. (HSC) ; pymol-users@lists.sourceforge.net

Re: [PyMOL] volume representation is extremely dark colored

Can you try: set precomputed_lighting, 1 set use_shaders, 0 *Akbar Shaikh* | Associate Scientist II *P:* +91 9767217767 [image: Schrodinger Logo] Science and Technology Support On Wed, May 27, 2020 at 8:11 AM

Re: [PyMOL] volume representation is extremely dark colored

Hi Vitali, Try this: set precomputed_lighting Or upgrade to the latest PyMOL version which has this setting by default. It's an Intel Graphics driver issue, you can read about it in this bug report: https://github.com/schrodinger/pymol-open-source/issues/15 Cheers, Thomas > On May 27,