Re: [PyMOL] Python script with iterate_state and selection command

Hi Pedro It does not work, the pymol crashes if I use this selection Stéphane -- Stéphane Abel, Ph.D. CEA Centre de Saclay DRF/JOLIOT/I2BC-S/SB2SM/LBMS Bat 528, Office 138C Gif-sur-Yvette, F-91191 FRANCE Phone (portable) : +33 6 49 37 70 6

Re: [PyMOL] Python script with iterate_state and selection command

Hi, Not sure if I understood your code but maybe you want change Myselection to: Myselection="resname SOL within 3.5 of resname CHO" -- Pedro Lacerda Em seg, 22 de jun de 2020 10:44, ABEL Stephane escreveu: > Hello all, > > I would like to write a basic python script to select residues for ea

[PyMOL] Python script with iterate_state and selection command

Hello all, I would like to write a basic python script to select residues for each state using the iterate_state and output the results first in pymol console window with the following format frame 1 : resid ... frame 2 : resid ... ... ### my script ## from pymol import cmd, stored mytra

Re: [PyMOL] Install license file from CLI

Hi Antonio, Thanks for the diagnostics data. > I'm working with a virtual environment. Ah, that's the crux. I assume you've used something like `python3 -m venv --system-site-packages`. That happens to be not compatible with how PyMOL finds $PYMOL_PATH, it uses `sys.prefix` for that which now

Re: [PyMOL] Install license file from CLI

This is the diagnostics log. Please keep reading at the end of the log: PyMOL(TM) 2.3.4 - Incentive Product Copyright (C) Schrodinger, LLC This Executable Build integrates and extends Open-Source P