Re: [PyMOL] cmd.get_fastastr()

2020-07-07 Thread Pedro Lacerda
Thank you for this pearl. Em ter., 7 de jul. de 2020 às 11:23, Thomas Holder < thomas.hol...@schrodinger.com> escreveu: > Hi Pedro, > > I would probably just count CA atoms. Something like this: > > # Check nearby peptides > tmpsele = pm.get_unused_name("_tmp") > pm.select(tmpsele, f"({sim_pdb}

Re: [PyMOL] Which 3D setup for a new installation? (Since 3D Vision is discontinued)

2020-07-07 Thread Thomas Holder
Hi Vaheh, As far as I know, any Nvidia Quadro card with a 3-pin mini-DIN connector should work. For example the Quadro P4000 or P5000. See also: https://nvidia.custhelp.com/app/answers/detail/a_id/4845 https://www.schrodinger.com/kb/1745 Cheers, Thomas > On Jul 7, 2020, at 4:16 PM,

Re: [PyMOL] cmd.get_fastastr()

2020-07-07 Thread Thomas Holder
Hi Pedro, I would probably just count CA atoms. Something like this: # Check nearby peptides tmpsele = pm.get_unused_name("_tmp") pm.select(tmpsele, f"({sim_pdb} and polymer) within 5 of " f"({entry.pdb_id} and (bysegi resid {entry.ligand_resid} " f"and chain {entry.ligand_chain}))") for

Re: [PyMOL] Which 3D setup for a new installation? (Since 3D Vision is discontinued)

2020-07-07 Thread Oganesyan, Vaheh
Hi Thomas, Can you also mention appropriate graphics cards that pair well with the Volfoni hardware? Thank you. From: Thomas Holder Sent: Tuesday, July 7, 2020 10:03 AM To: David Krause Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Which 3D setup for a new installation? (Since

Re: [PyMOL] Which 3D setup for a new installation? (Since 3D Vision is discontinued)

2020-07-07 Thread Thomas Holder
Hi David, I won't be able to really give a future proof recommendation, but at least I can say that we have emitters and glasses from Volfoni which work so far as a suitable replacement for Nvidia's 3D vision. emitter: Volfoni ActivHub RF one (VPES-07000) glasses: Volfoni EDGE RF 3D