Hello Prof. Blaine,
Thanks a lot for the detailed explanation. The model is out of MD
simulations with the box information.
I will try the workflow you suggested.
I very much appreciate your help.
Best regards,
Amir
On Wed, Nov 10, 2021 at 8:21 PM Mooers, Blaine H.M. (HSC) <
Hi Amir,
No, not automatically. Your RNA is very distorted from
the standard A-form. I doubt any modeling program
can accurately extend such a distorted helix. Maybe
someone else will prove me wrong.
Your RNA does not have the expected
doughnut cross-section of the A-form when
viewed down the
Hello,
I have an RNA duplex with 13 base-pairs (attached). Is it possible to
duplicate this system and then fuse the two molecules to create a 26
base-pair long system using the pymol.
Thanks in advance.
Cheers,
Amir
model.pdb
Description: Protein Databank data
