1. Are you sure it is a bond and not merely a rendering artifact with two
hydrogens superimposed on each other? Have you tried flipping through rotamers
for either side chain to see if this resolves the clash?
1. If it is a "real" bond intended by those who created the model, then
> On 5 Sep 2022, at 16:39, Bruhn, Matthias wrote:
>
> Dear pymol users,
> does anybody recognize this type of bond and can explain me what this is? It
> appears between a Lysine and an Aspartic acid. I expect a hydrogen bond, but
> for some reason PyMol connects the two amino acids with a
Hello PyMOL users,
I was wondering how to extract the total extent of helicity between two
peptide structures on Pymol.
[image: image.png]
[image: image.png]
Any insight would be appreciated.
Many thanks,
Neena
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