Hi there,
When one uses the APBS plugin of pymol to generate a pqr file, how
dose it assign the partial charges to the atoms, what force field is
it based on? Thank you.
Chun
erent for the pqr file of the same structure generated on pdb2pqr
server. My question is how does pymol assign partial charges? I can only
find a file called apbs_tools.py under the directory of
./modules/pmg_tk/startup/ that remotely has some information.
Chun
On 4/11/06, Chun Tang wrote:
>
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Dear PyMoler,
In the pymol apbs tool, there is an option to show the
negative/positive isosurface (not the molecular surface) upon loading
an electrostatic map. My question is if there is a way to show the
electrostatic potential surface as mesh instead of solid surface, also
if it is possible to
Dear all,
I don't know if this has been discussed before.
I noticed that the structure is completely wrong when I have
cylindrical representation of helices turned on. This happens when I
have multiple structures loaded up - rendering of single pdb file
seems all right. I am using version 1.1 on
Hi,
I know pymol can do surface. I want to know if the new release of pymol
0.83 can show electrostaic surface. Thanks.
Chun
