[PyMOL] disable automatic zoom upon create

2011-11-16 Thread Daniel Larsson
Hi, Is it possible to disable the automatic zoom of the view to fit the newly created object when one issues the create command? Daniel -- RSA(R) Conference 2012 Save $700 by Nov 18 Register now

[PyMOL] solid objects

2012-02-14 Thread Daniel Larsson
Hi, Is there a way to render truncated/clipped objects as dense. I.e. a lid on clipped objects, such as surfaces or spheres. Want I want is something similar to the A sliced image example in the wiki gallery (http://www.pymolwiki.org/index.php/Gallery), but with that technique I can only pick

Re: [PyMOL] solid objects

2012-02-14 Thread Daniel Larsson
, but that's just ray tracing). Please file an RFE and we'll look into it. Cheers, -- Jason On Tue, Feb 14, 2012 at 11:17 AM, Daniel Larsson lars...@xray.bmc.uu.se wrote: Hi, Is there a way to render truncated/clipped objects as dense. I.e. a lid on clipped objects, such as surfaces

[PyMOL] map_new questions

2012-02-29 Thread Daniel Larsson
I'm trying to understand the map_new command, especially the gaussian option. What determines the shape of the gaussian function? What is the relationship between the b factor and the variance (or the full-width-half-maxium) of the gaussian? How is the map normalized? What does the grid option

[PyMOL] exporting maps

2015-01-09 Thread Daniel Larsson
I have created a pseudo-low resolution electron density map from a PDB-file using the map_new command. Is it possible to export or save that map to a file? Any format should be fine. Daniel -- Dive into the World of