Hi Nicolas,
I have the same SGI computer, Indigo 2 Impact 1
running IRIX 6.5.22m (BTW upgrade to this release is free from
supportfolio at SGI, might have to install patch 5086 first)
I have stereo graphics emitter and glasses,
and stereo works fine,
i just double click a link on my
...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Dr. Daniel James White PhD
Sent: Thursday, September 16, 2004 10:41 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] building pymol on sgi irix 6.2 gcc 2.95.2
Hi Warren and all,
I'm trying building
Hi all,
building pymol external sources on irix6.2 with gcc 2.95
tcl and tk and zlib build ok!!!
but python fails at the first hurdle with:
creating Makefile
cd
/usr/people/dwhite/freestuff/pymolstuff/ext-0_95/src/Python-2.3.3; make
cc -n32 -c -OPT:Olimit=0 -DNDEBUG -O -I.
Hi Warren and all,
I'm trying building pymol on sgi irix 6.2 gcc 2.95.2
(I got root access to that old sgi indigo2 extreme irix 6.2, and got a
13W3 to VGA cable to connect it to my sony g520 monitor, and it works
great.)
I installed gcc2.95.2,
and am building the external dependencies for
Hi there,
Just on the off chance that someone might know...
We have a sgi indigo2 that is working, but the monitor seems to have a
problem
its a sony (sgi) GDM-20D11
There is no picture when it is turned on,
and the green and amber LEDs next to each other on the bottom right of
the
Hi
has anyone had any luck getting quad buffered stereo with the new ATI
linux drivers, fglrx 3.11
I wondered if any one has a working XFree86 config file?
my setup is
ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel
(fedora core 2),
trying to get quad buffered stereo on
Hi everyone!
how can I enable direct rendering DRI on fedora core 2?
I have an ATI radeon 8500 LE,
Should I use the redeon driver, or the r200 driver?
I edited my xorg.conf file is as below, but VMD and pymol tells me I
am still using indirect mesa rendering, and it is SLOW.
the ATI
segi 0001
http://delsci.com/img/1c8e-subunit.jpg
Cheers,
Warren
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Dr. Daniel James White PhD
Sent: Tuesday, April 06, 2004 6:22 AM
To: pymol-users
Warren,
Exactly what I needed!
cheers
Dan
On 5 Apr 2004, at 23:08, pymol-users-requ...@lists.sourceforge.net
wrote:
Message: 10
From: Warren DeLano war...@delanoscientific.com
To: 'Todd Geders' ged...@purdue.edu,
'Ann Mullin' amul...@tulane.edu
Cc:
Hi all,
I opened a biological unit pdb file of a viral capsid protein
containing the 60 states or models making up the whole viral capsid
structure.
I did
split_states
to get all 60 molecules as individual objects
sweet!
then I deleted the ones I didnt want, leaving 15 molecules around one
Hi,
I have a virus envelope protein structure pdb entry,
and I want to rebuild the whole virus protein shell
using the symmetry transformations given in the 180 (60 trimers)
REMARK 350 BIOMT1 1 1.0 0.0 0.0
REMARK 350 BIOMT2 1 0.0 1.0 0.0
REMARK 350 BIOMT3 1
.
~Todd Geders
On Fri, 2004-04-02 at 07:14, Dr. Daniel James White PhD wrote:
Hi,
I have a virus envelope protein structure pdb entry,
and I want to rebuild the whole virus protein shell
using the symmetry transformations given in the 180 (60 trimers)
REMARK 350 BIOMT1 1 1.0 0.0 0.0
Hi,
I have 2 monitors running out of an ATI Radeon 8500 on redhat 8.0 using
the summit accelerated Xserver from Xig.com for hardware stereo on one
of the monitors.
I use the dual view function, so 1 big desktop (1 screen on 2
monitors)
Very hardware accelerated!
cheers
Dan
On 12 Nov
Warren ,
Are you aware of the python MMTK molecular dynamics package?
AMBER force field and energy minimisation are there!
Could this be easily interfaced with pymol?
http://starship.python.net/crew/hinsen/MMTK/
I had a play with it but I don't really know what I am doing and need
to
is a digital
video
output and I need to shop for the stereo enabler cable...
ulrich
Re: [PyMOL] Nuvision stereo glasses?
* From: Dr. Daniel James White PhD d...@removethischalkie.org.uk
* Date: Fri, 18 Jul 2003 11:59:17 +0300
* In-reply-to: e19dlwr-0005zt...@sc8-sf-list2
Hi Warren and all,
My student is experiencing a crash every time she attempts to open a
.pse saved session file.
The file is of a large trimeric molecule in a cartoon and space fill
representation with different coloured domains
Hardware: PC, Athalon, 1gb ram, ATI radeon 8500 video card, 2
Hi David,
ATI radeon 8500 works with the xig.com Summit Xserver,
with stereographics stereo enabler cable (takes sync from the monitor
cable)
and infra red emitter box E2 with stereographics infra red shutter
glasses.
i don't know if this emitter and enabler cable work with nuvision
glasses?
Hi,
Sounds line you didn't have a correct installation of the Xig
summit2.2???
I thought the installation was supposed to move all the old mesa/GL
stugff to a back up and replace them with
the acellerated xig ones?
Have you contacted the guys at Xig?
If you have paid the 99 dollars or
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