[PyMOL] Problem aligning two structures: ExecutiveAlign-Error: atomic alignment failed (mismatched identifiers?)

2016-02-23 Thread Ebert Maximilian
Hi there, maybe the subject is a little bit misleading but i couldn’t find any better description. Basically I am trying to align two PDB structures, one is from the PDB directly and the other one is a file containing conformation information about a specific loop of the protein from the PDB. S

[PyMOL] Calling a plugin function from python script

2016-06-01 Thread Ebert Maximilian
Hi there, I am trying to call the spectrumany plugin (or any plugin) from within a python script. I am generating a PSE file from within python in the following fashion: #!/usr/bin/python import __main__ __main__.pymol_argv = ['pymol','-qc'] # Pymol: quiet and no GUI import pymol pymol.finish_la