.
Of course it would be a whole lot easier if PyMol output VRML directly
. Warren ?
Laurence Pearl
On 15 Mar 2006, at 17:01, Benjamin Hitz wrote:
I am interested in the coordinates of the vertices of the mesh
representation of the molecular surface. Is there any method to read
them
Is it just me or has the new release of MacPyMol gone very slow when
rendering transparent surfaces ?
--
Laurence H. Pearl
Section of Structural Biology, Institute of Cancer Research
Chester Beatty Laboratories,
It was just me - loading a .pse created with the previous version
seemed to be the problem. When I loaded a new coordinate file into that
session, everything seemed to click back to normal.
On 23 May 2005, at 12:56, Laurence Pearl wrote:
Is it just me or has the new release of MacPyMol
When I set 'cartoon_cynlindrical_helices' to 1, I'm getting cylinders
with coloured ends, but black sides
I'm using version 0.92 on OSX 10.2.8
any ideas ??
--
Laurence H. Pearl
Section of Structural
, liberating * to its otherwise
universal role as wild-card.
Laurence Pearl
On Wednesday, February 18, 2004, at 05:25 pm, Eric Zollars wrote:
Anyone who works with nucleic acids will certainly prefer the current
situation. From the PDB format guidelines:
* The asterisk (*) is used
I'm still not sure about all this 'cool' stuff - Python looks to me
like the illegitimate spawn of C and BASIC, but then I used to program
in 6502 machine code so what do I know .
Below is a variant of camera_travel (as Pythonised by Lieven Buts)
which takes an explicit final view matrix
-like routine - feel free to improve it.
# camera_travel - Laurence Pearl, November 2003
import cmd
import math
def camera_travel(first,nframes=30,sel='(all)',zflag=0,zlevel=2):
# first - start frame
# nframes - duration
# sel - atom selection that defines the orientation at the end
I'm having a problem with the routine described a few months ago for
rotating the direction of the light source when the picture is rotated
for making a stereo pair.
The problem is as follows :
PyMOLrun turn_y_light.py
Traceback (most recent call last):
File
Can anyone help me with the selection commands in PyMOL to select (and
subsequently colour) residues by their secondary structure ?
Many Thanks,
Laurence
--
---
Laurence H. Pearl
Section of Structural Biology,
