[PyMOL] PDB: How to extract

2011-04-19 Thread Sergey Ivanov
How to extract only two beads within 7? I have two beads with big bond distance between them and i want to obtain their id's in original pdb file. -- Kind regards, Sergey Ivanov -- Benefiting from S

[PyMOL] Symbol '$' in filenames not properly escaped

2011-07-08 Thread Sergey Ivanov
r.250\res000480_bounded_no_bonds.pdb'. Problem is obvious. Pymol treats $DI39 as variable i tried to calculate it value and, of course it empty. -- Kind regards, Sergey Ivanov -- All of the data generated in your IT infr

[PyMOL] Cannot compile

2010-06-29 Thread Sergey Ivanov
h: No such file or directory" I've tried on both cygwin and linux debian lenny machines with no success. Revision to install - 3910. I've read before troubles of Hari (http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07678.html) but its not seems to be my case :( --

[PyMOL] emovie scripting

2010-09-21 Thread Sergey Ivanov
(640,480) cmd.set("connect_mode", "1") cmd.set("connect_bonded", "1") cmd.set("ray_trace_frames", "0") file_list = glob("*.pdb") for vfile in file_list: cmd.load(vfile,"mov") eMovie.mv_turn("1-10:1-1",&qu

[PyMOL] zoom w/o ray-trace

2010-09-21 Thread Sergey Ivanov
Why in case when ray tracing is off image is cutted after load procedure? cmd.zoom("all", 0.0, 0, 1) doesn't help -- Kind regards, Sergey Ivanov -- Start uncovering the many advantages of virtual appli

[PyMOL] Fwd: emovie scripting

2010-09-22 Thread Sergey Ivanov
Still no ideas? Guys, how then you do movie without gui mode??? -- Forwarded message -- From: Sergey Ivanov Date: 2010/9/21 Subject: emovie scripting To: pymol-users@lists.sourceforge.net Hello, help me please create script that loads frames (say, 30) from pdb files and rotate

[PyMOL] "Model" pdb section support

2011-01-10 Thread Sergey Ivanov
model? "WITHOUT" because it's just test data for real structures more than 10 beads. -- Kind regards, Sergey Ivanov -- Gaining the trust of online customers is vital for the success of any company that req