are
responsible for this level progress. The diff from v1.4 to v1.5 was in
the range of 50,000+ lines -- and we couldn't have done that work
without our supporters. So, a special thanks goes out to them!
Cheers,
-- Jason
On Wed, Jun 13, 2012 at 2:32 PM, Shane Neeley shane.nee...@gmail.com
Hi,
Does anyone use pymol for very large structures, such as a full virus
60-mer capsid? If so, what processing power, memory, graphics card, etc. do
you need to render these large files and manipulate them without any
slowing? PyMol takes about 1 minute to think after trying to spin one of
these
Hi,
This is unrelated to PyMol, but I just wanted to spam the community to see
what they think about different protein parameters. Let me know if this
sort of question is inappropriate for the forum.
I have thousands of randomly generated 7 amino acid peptide sequences that
are within a virus.
Hi, I am using color_by_mutations on PyMol 1.3.
http://www.pymolwiki.org/index.php/Color_By_Mutations
I get this error:
PyMOLrun color_by_mutation.py
PyMOLcolor_by_mutation aav2, aav8
ExecutiveRMS-Error: Atom counts between selections don't match (30882 vs
30227)
Executive: Error -- no atoms
AttributeError: 'module' object has no attribute 'super'
I am trying to run color_by_mutation
http://www.pymolwiki.org/index.php/Color_By_Mutations
But I get that error. Maybe my version of Mac PyMol from 2006 doesn't have
that superimpose command? How do I fix this?
Thank you.
Shane
Thanks Guys I just had to self update fink.
On Thu, Mar 15, 2012 at 4:46 PM, Shane Neeley shane.nee...@gmail.comwrote:
Hi, S.S. Thanks for your help. It says,
Failed: no package found for specification 'pymol-py27'!
null-b88d121ba616:~ chimpsarehungry$ fink list pymol
Information about 312
I've installed all of the packages for pymol-py27 with fink. And my
terminal went back to normal. Now what? How do I make PyMol an application?
On Thu, Mar 15, 2012 at 5:28 PM, Shane Neeley shane.nee...@gmail.comwrote:
Thanks Guys I just had to self update fink.
On Thu, Mar 15, 2012 at 4:46
Hi,
Does anyone know of a way to tell which amino acids are currently in view?
I am imagining something that highlights the the parts of the sequence that
are visible as you rotate the molecule around. It may be much more complex
than I am describing.
Shane
Hi Pymol Network,
I would appreciate someones help in extracting the sequence in the viewer
above the protein. I have gone through the sequence and changed AAs to
different colors based on their position. I would ideally like to be able
to copy that sequence with the colors that they are