[PyMOL] Reproduce results in the DSSR paper

ical to those in the paper and the post can be easily generated. Any questions related to the paper are welcomed on the 3DNA Forum. Dr. Xiang-Jun Lu, the lead author of the paper and the person spearheading the Forum, aims to respond promptly to any reported issues. [This message is cross-posted o

[PyMOL] issue with label command as in: label *, name; color red

message shows up only if "label *, name" is followed by another command, on the same line. I am using "Version 1.8.7.0 Open-Source" on macOS. Any ideas? Thanks, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web: http://x3dna.org/ Forum: http://forum.x3dna.org/

[PyMOL] DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL

producible examples. Best regards, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web: http://x3dna.org/ Forum: http://forum.x3dna.org/ ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net U

Re: [PyMOL] DSSR-enabled innovative schematics of 3D nucleic acid structures with PyMOL

out the wrong link to nar/gkz1222 -- I was reading that interesting paper on the U•A-U-rich RNA triple helix. The correct URL to the DSSR-PyMOL NAR paper is: https://doi.org/10.1093/nar/gkaa426 Best regards, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web: http://x3dna.org/ Forum: htt

Re: [PyMOL] [EXTERNAL] create a 26 bp RNA from a 13 bp system

Dear Blaine, On Fri, Nov 12, 2021 at 10:14 AM Mooers, Blaine H.M. (HSC) < blaine-moo...@ouhsc.edu> wrote: > Hi Xiang-Jun Lu, > > Thanks for proving me wrong. Congratulations on your duplicated model! > Please share the commands that you used with DSSR to generate the > dup

Re: [PyMOL] [EXTERNAL] create a 26 bp RNA from a 13 bp system

Hi Amir, Please have a look at the announcement "No more grant funding for 3DNA/DSSR" ( http://forum.x3dna.org/site-announcements/no-more-grant-funding-for-3dnadssr/) on the 3DNA Forum. DSSR results are reproduced, period. Best wishes, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Em

Re: [PyMOL] [EXTERNAL] create a 26 bp RNA from a 13 bp system

tides: 26 > [e] no matched residue for option --frame > > Thanks for your help. > > Best, > Amir > > > On Fri, Nov 12, 2021 at 11:00 AM Xiang-Jun Lu <3dna...@gmail.com> wrote: > >> Hi Amir, >> >> Please have a look at the announcement "

[PyMOL] Cover images of the RNA Journal generated by the NDB using DSSR and PyMOL

the December 2022 issue at https://rnajournal.cshlp.org/content/28/12.cover-expansion Users can easily generate such highly simplified, yet informative images of nucleic acid structures using http://skmatic.x3dna.org Best regards, Xiang-Jun -- Xiang-Jun Lu (Ph.D.) Email: xiang...@x3dna.org Web