[PyMOL] PyMol can't show molecule as line

Hello, I've just installed Python2.7 and pre-compiled PyMol 1.6 on my WindowsXP by following the instruction at PyMol wiki. The installation went through, and most function on viewing/drawing a molecule are fine except that "show as lines" doesn't work. When clicking "show as lines" or typing the

[PyMOL] question on making movie between two scenes with different point of view

Hello everybody, I'm trying to make a movie for chaning the point of view on a structure. I let PyMol read in matrix then define it as a scene. After the movie was set up, I can watch the movie playing well on the PyMol window. However, if I try to save the PNG sequence, I get few discontinuous pi

[PyMOL] how to alter the "reps"

Hi all, I have a question about alter command on "reps" variable. I find reps is zero when object being set with "hide everything". I try to modify one atom's reps to be zero by using the following alter command: alter (resi 84 and name CE1), reps=0 It seems the reps do changed to 0, but that a

[PyMOL] is it possible to hide atom for part of states instead of for all states

Hello all, I have a cpH-MD trajectory in which the titratable residue contains coordinates for all possible protons. There is another file could be used to determine which proton should be shown for each frame of trajectory, and thus the protonation state of this residue could be determined and mi