Re: [PyMOL] Mac OS X 10.4.3
I see the same flickering problem (iMac G5, OSX 10.4.3). Opening as pymol -M doesn't help. Best, Morri On 11/3/05, Sabuj Pattanayek sabuj.pattana...@vanderbilt.edu wrote: I don't know if it will make a difference (I don't even have a Mac) but try opening it from a console using: pymol -M -- Morri Feldman Shokat Lab UCSF Biophysics Graduate Program
Re: [PyMOL] Ray Tracing Bug in Pymol 0.93 on SuSE Linux 8.2
Hi Michael, I downloaded pymol-0_93-bin-linux-libc6-i386.tgz to my Debian machine. When I run this copy rather than the .deb version I am able to ray trace lines without a crash. Best, Morri On Thu, 19 Feb 2004, Michael Banck wrote: On Thu, Feb 19, 2004 at 08:22:14AM +0100, Thomas Siegmund wrote: For me PyMol on SuSE 8.2 crashed always when raytracing a line element. That seems to be identical to Debian Bug #229080 (http://bugs.debian.org/229080) The stock compiler on SuSE 8.2 is gcc 3.3 20030226 (prerelease). I got the same crash with gcc 3.3.1, but not with gcc 2.95. I have not tried it on SUSE 9 yet, installing and using gcc 2.95 (for PyMol only) solved the problem for me. See PyMol bugreport 806361. Thanks for the information, I will see whether that helps on Debian, too. Michael --- SF.Net is sponsored by: Speed Start Your Linux Apps Now. Build and deploy apps Web services for Linux with a free DVD software kit from IBM. Click Now! http://ads.osdn.com/?ad_id=1356alloc_id=3438op=click ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
Re: [PyMOL] different stick_radius for different residues
Dear Frank, try: create forSticks1, resi 1-2 show sticks, forSticks1 set stick_radius, .25, forSticks1 create forSticks2, resi 12-15 show sticks, forSticks2 set stick_radius, .1, forSticks2 By using create, you create a new named object with its own settings database. The new object's settings can be set independently of other objects. Best, Morri On Tue, 3 Feb 2004, Dr. S. Frank Yan wrote: Hi, I was wondering if Pymol is capable of setting different stick thickness for different residues of a molecule. I tried set stick_radius=0.25 show sticks, resi 1-2 set stick_radius=0.1 show sticks, resi 12-15 It appears that the stick_radius variable is global, and it changes the thickness of all the sticks. Thanks, Frank __ Do you Yahoo!? Yahoo! SiteBuilder - Free web site building tool. Try it! http://webhosting.yahoo.com/ps/sb/ --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
Re: [PyMOL] Ray Tracing Crash
On Thu, 22 Jan 2004 11:02:25 +0100 Michael Banck wrote: On Wed, Jan 21, 2004 at 09:11:01PM -0800, Morri Feldman wrote: Regarding my problems raytracing on my debian/testing machine. What is the exact version of the pymol .deb you're using? 0.93-2? pymol_0.93-2_i386.deb What architecture are you running on? i386 or something else? i386, Pentium III Do you use pymol's internal raytracer, or povray? I invoke the raytracer by typing ray. I assume this is the internal raytracer. Does the raytracing-demo from the demo-menu work? The ray tracing demo works. But after running the raytracing-demo, pymol will crash if I type either: hide spheres show sticks ray or: hide spheres show lines ray Thanks, Morri thanks, Michael --- The SF.Net email is sponsored by EclipseCon 2004 Premiere Conference on Open Tools Development and Integration See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. http://www.eclipsecon.org/osdn ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users Morri Feldman
[PyMOL] Ray Tracing Crash
I am running pymol .93. When I try to ray trace a scene, the gui shows a white status bar that moves halfway across the screen and then freezes. After this the GUI is frozen and must be killed. No error messages are shown. The computer is running RedHat 9 and has 4 processors. Has anyone else experienced this problem? Do you have any solutions? This message may double post because I accidentally tried to post it from my other email account. Sorry Thanks, Morri Morri Feldman
