[PyMOL] molecular sculpting

2002-07-18 Thread Patricia.A.Elkins
I would like to understand the molecular sculpting possibilities of pymol 
but haven't been able to figure it out yet.  When using the wizard, the 
first request is to click and atom but how to proceed from there? 

I have used the bit of script provided on the web page and deformed 
the benzene ring but have not been clever enough to see the possibilities 
from that. 

Could anyone provide just enough of a step-by-step push-this, click-that 
lead into the 
molecular sculpting to get me started?

Thanks! 
Trissa



[PyMOL] Molecular sculpting video

2002-07-15 Thread Patricia.A.Elkins
I can't find the molecular sculpting video on the home page.
I have looked under Movies and Gallery.  Could someone
point out its location to me please?

Thanks,
Trissa



[PyMOL] Re: movie -script - conversion from .png to .tga

2002-07-15 Thread Patricia.A.Elkins
I am trying to run the mkmov1.pml script from the Pymol page.
I am stopped at the line

/for i in glob(png/*):os.system(convert +i+  re.sub(png, tga, 
re.sub(_,.,i)))

I get the errors:
Traceback (innermost last):
  File /apps/pymol/modules/pymol/parser.py, line 98, in parse
exec(com2[nest],pymol_names,pymol_names)
  File string, line 1
 for i in glob(png/*): os.system(convert +i+
^
 SyntaxError: invalid token
PyMOL+re.sub(png,tga,re.sub(_,.,i)))
Traceback (innermost last):
  File /apps/pymol/modules/pymol/parser.py, line 234, in parse
exec(com2[nest],pymol_names,pymol_names)
  File string, line 1
 +re.sub(png,tga,re.sub(_,.,i)))
 ^
 SyntaxError: invalid syntax

Without knowing python, I haven't been able to figure out what is wrong
with the input line.  Can anyone help?

Thanks!
Trissa