[PyMOL] How to find Vander Waals interactions for a particular residue?
Dear pymol users, I would like to calculate vander waals interaction of a patricular residue in a pdb. kindly tell me how to do it? Thanks in advance Surya Graduate student India. -- ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Is it possible to find pi-pi interactions and cation-pi interactions of a PDB?
Dear Users, I have one pdb file and would like to find the pi-pi interactions and cation-pi interactions in it. Is it possible to find by pymol. If it does by pymol, kindly tell me how to do it. thanks in advance Surya Graduate student India. -- Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Ball and stick model
Dear Pymol Users I would like to represent the protein what I have in ball and stick model. I have done it by executing the command lines as following hide all show spheres show sticks set sphere_scale, 0.3 set stick_radius, 0.1 My question is can I do it by any other method? Means from pymol interface..!! Surya Graduate student India. -- Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] How to build imedazole by using builder
Dear pymol users I have been trying to build imidazol ring to one incomplete His of my pdb file by using builder in pymol. After finishing this ring I saved and opened once again by pymol. I have seen some thing like mess formation with in the residues. I request you to tell me what could be the reason and how do I overcome it. Thanks in advance Surya Graduate student India. -- Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://pubads.g.doubleclick.net/gampad/clk?id=154624111iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Error occurs as mess after making the imidazol ring of His.
Dear pymol users I have been trying to build imidazol ring to one incomplete His of my pdb file by using builder in pymol. After finishing this ring I saved and opened once again by pymol. I have seen some thing like mess formation with in the residues. I request you to tell me what could be the reason and how do I overcome it. Thanks in advance Surya Graduate student India. -- Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://pubads.g.doubleclick.net/gampad/clk?id=154624111iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
