[PyMOL] Modeling Protein-DNA complex

[soumi]

Hi,   I docked dna with homeodomain protein formed from modeller 
and  get docked protein-dna complex.I want to incorporate water molecules 
within homeodomain protein-dna complex which we observe in RCSB PDB file.Can it 
be possible using Pymol?Thanks,Soumi--
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[PyMOL] Modeling protein-dna complex

[soumi]

Hi,    I carry on my research work on protein-dna complex 
system.I have one dna pdb and one protein-dna complex pdb.I want to make new 
protein-dna complex pdb taking  dna from single pdb and protein from 
protein-dna complex.Protein possess similar DNA-binding specificities.I 
superimpose two pdb file and remove dna from protein-dna complex pdb .But I can 
not save new protein-dna complex.Please let me know by pymol how I would be 
able to model of the referred paper was done.Thankssoumi--
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[PyMOL] Problem with pymol

[soumi]

Respected Sir,

   Can I build a model using missing residues through Pymol ? If it 
is,Please 

tell me the way.



With Regards,

SoumiDas--
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[PyMOL] Problem using pymol

[soumi]

Respected Sir,

  Please let me know how can I renumber protein chains to avoid 
overlap and give it a uniqu chain id.

How can I change .pse file to .pdb file?



With regards,

Soumi Das--
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