Re: [PyMOL] Cel shading in PyMOL
Hi Jacob Osvaldo, the ray tracer has cel shading as ray trace mode 3. PyMOL set ray_trace_mode, 3 PyMOL ray See also: http://pymolwiki.org/index.php/Ray#Modes Hope that helps. Cheers, Thomas On 13 Jan 2015, at 08:07, Osvaldo Martin aloctavo...@gmail.com wrote: Hi Jacob, What about the Goodsell-like representation from here? Cheers, Osvaldo. On Tue, Jan 13, 2015 at 7:29 AM, Jacob Lewis jl...@uowmail.edu.au wrote: Hi all, Has anyone figured out a good way to do Cel shading in pymol? Or even the sort of variables to play with? Cheers, Jacob -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Cel shading in PyMOL
Hi all, Has anyone figured out a good way to do Cel shading in pymol? Or even the sort of variables to play with? Cheers, Jacob -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Cel shading in PyMOL
Hi Jacob, What about the Goodsell-like representation from here http://www.pymolwiki.org/index.php/Gallery? Cheers, Osvaldo. On Tue, Jan 13, 2015 at 7:29 AM, Jacob Lewis jl...@uowmail.edu.au wrote: Hi all, Has anyone figured out a good way to do Cel shading in pymol? Or even the sort of variables to play with? Cheers, Jacob -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Cel shading in PyMOL
Hi Jacob, If you have the right mix of display drivers and Pymol version, you can try GLSL shaders. http://www.pymolwiki.org/index.php/GLSL_Shaders Unfortunately, it does not work flawlessly across platforms and I have not invested any more time figuring it out because the shader system in Pymol still appears to be a work-in-progress. Best, Shiven Shivender Shandilya, Senior Post-Doc, Schiffer Lab, Dept. of Biochemistry Molecular Pharmacology, University of Massachusetts Medical School. Worcester, MA 01605. On Jan 13, 2015, at 9:39 AM, Thomas Holder thomas.hol...@schrodinger.com wrote: Hi Jacob Osvaldo, the ray tracer has cel shading as ray trace mode 3. PyMOL set ray_trace_mode, 3 PyMOL ray See also: http://pymolwiki.org/index.php/Ray#Modes Hope that helps. Cheers, Thomas On 13 Jan 2015, at 08:07, Osvaldo Martin aloctavo...@gmail.com wrote: Hi Jacob, What about the Goodsell-like representation from here? Cheers, Osvaldo. On Tue, Jan 13, 2015 at 7:29 AM, Jacob Lewis jl...@uowmail.edu.au wrote: Hi all, Has anyone figured out a good way to do Cel shading in pymol? Or even the sort of variables to play with? Cheers, Jacob -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- New Year. New Location. New Benefits. New Data Center in Ashburn, VA. GigeNET is offering a free month of service with a new server in Ashburn. Choose from 2 high performing configs, both with 100TB of bandwidth. Higher redundancy.Lower latency.Increased capacity.Completely compliant. http://p.sf.net/sfu/gigenet ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net