Re: [PyMOL] electrostatic potential as cartoon?

Erratum: Of course I meant "solvent accessible", not "excluded". On 05 Jan 2017, at 09:52, Thomas Holder wrote: > Hi Vincent, > > Coloring the cartoon with a color ramp is not possible unfortunately. > Incentive PyMOL since version 1.8 can color ribbon by ramp,

Re: [PyMOL] electrostatic potential as cartoon?

Hi Vincent, Coloring the cartoon with a color ramp is not possible unfortunately. Incentive PyMOL since version 1.8 can color ribbon by ramp, if that helps. However, electrostatic potential locally probed along the backbone will not be very meaningful. Typically you would look at

Re: [PyMOL] electrostatic potential as cartoon?

Vincent, You could use data2bfactor.py and then "spectrum b" to color residues in cartoon settings. https://pymolwiki.org/index.php/Color (data2bfactor from Robert Campbell's script repository: http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ Jed On 1/4/2017 11:05 AM, vincent Chaptal

[PyMOL] electrostatic potential as cartoon?

Hi everyone, is there a way to color by electrostatic potential but display the structure as cartoon? a workaround could be : color white, molecule color red, resn asp+glu+thr+ser etc.. color blue, resn arg+lys ... but this seems rather flimsy. Thank you and best wishes for the new year.