[PyMOL] figure of buried surface area

2009-08-08 Thread Jiamu Du
Dear Pymol BBSers, I want to generate a figure to show the overlap of two binding epitopes. Both two proteins A and B can interact with protein C, while their binding epitopes on C are overlapped. So I want to generate a figrue as this: the surface of protein C is colored as white, the buried

Re: [PyMOL] figure of buried surface area

2009-08-08 Thread Shiven Shandilya
Hi Jiamu, Have you looked at VASCo : http://genome.tugraz.at/VASCo/ I have found it to be very useful and very capable. Contact interfaces, electrostatics (with Delphi) and many other features are available. And best of all, it works extremely well with PyMOL. Do read the manual carefully and