PyMOL can certainly color surfaces by atom color and other properties.
color green, elem c
color violet, elem n+o
But Grasp's hydrophobicity function may be doing something more
sophisticated then that...
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Sent: Wednesday, February 18, 2004 7:12 PM
Subject: [PyMOL] molecular surface colored by hydrophobicity
I am preparing a figure of a molecualr surface, colored by
the hydrophobicity of surface residues. Can pymol do this job?
How about showing atom C* in a color, and N* and O* in another color?
In fact I have tried GRASP but failed in coloring the
surface. I used r=hyd, but could not color the surface of
those redisues. This is an old version of grasp (1.0?). I am
not familiar with this program. If anybody can tell me the
correct way of doing it in grasp, it will also be greatly appreciated.
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