[PyMOL] nmr files

2006-07-29 Thread Chandra Verma

I have two questions:

1. how does one load in all pdb files from an nmr -type master pdb file 
where the various models are delimited by the keyword MODEL


2. given two or more chains in a pdb file, how can i draw a surface that 
takes into account only a selection. when i try this after the usual 
selection of say chain A, it draws the surface but if there is an 
interface of chainA and chain B then there is a cut at the interfacial 
region. someone once told me but i accidentally deleted that email


thanks

chandra




Re: [PyMOL] nmr files

2006-07-29 Thread Tsjerk Wassenaar

Hi Chandra,

1. Just load the file on the command line or through the interface
(load). Then to show all structures use 'set all_states,1' or
'split_states' if you want to have them as separate objects.

2. First create an object of the selection.

3. Please read the manual, search the archives and the Wiki, as these
issues have crossed several times already.

Cheers,

Tsjerk

On 7/29/06, Chandra Verma chan...@bii.a-star.edu.sg wrote:

I have two questions:

1. how does one load in all pdb files from an nmr -type master pdb file
where the various models are delimited by the keyword MODEL

2. given two or more chains in a pdb file, how can i draw a surface that
takes into account only a selection. when i try this after the usual
selection of say chain A, it draws the surface but if there is an
interface of chainA and chain B then there is a cut at the interfacial
region. someone once told me but i accidentally deleted that email

thanks

chandra


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Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
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