Re: [PyMOL] Rotation/Translation

2010-05-30 Thread Martin Hoefling
Quoting J. Fleming moloch...@gmail.com: Hello Jon ML, print cmd.get_object_matrix(A) How do I go from the matrix to an angle and distance? according to http://www.pymolwiki.org/index.php/Get_object_matrix you should recieve a 4x4 matrix which contains the inital and target translation

Re: [PyMOL] Rotation/Translation

2010-05-30 Thread Christoph Gohlke
On 5/29/2010 8:21 AM, J. Fleming wrote: Hello, I've been using 'super' to align the C-alphas within one domain of two different models of the same protein while leaving the second domain to move freely. I can do this using: super (A and resid 1-100 and name ca), (B and resid 1-100 and

[PyMOL] Rotation/Translation

2010-05-29 Thread J. Fleming
Hello, I've been using 'super' to align the C-alphas within one domain of two different models of the same protein while leaving the second domain to move freely. I can do this using: super (A and resid 1-100 and name ca), (B and resid 1-100 and name ca) What I would like to do is determine