subject:"\[PyMOL\] Backbone RMSD"

Re: [PyMOL] Backbone RMSD

2014-09-10 Thread Robert Campbell

Hello Amita, On Wed, 2014-09-10 09:41 EDT, Amita Rani Sahoo amita.r.sa...@gmail.com wrote: Dear Pymol users, I want to calculate backbone RMSD of proteins having two different conformations (For example 2RH1 and 1F88). With the align command it calculates the executive RMSD, but i need

Re: [PyMOL] Backbone RMSD

2014-09-10 Thread Peter Kahn

Try this: PyMOLsuper PDBfile1CA, PDBfile2CA PyMOLSave PDBfile1.pdb, PDBfile1 PyMOLSave PDBfile2.pdb, PDBfile2 Explanation: The first line aligns the alpha carbons of the two files.I assume you have loaded the two files in advance. The RMSD will appear on the screen as output.The

[PyMOL] Backbone RMSD

2014-09-09 Thread Amita Rani Sahoo

Dear Pymol users, I want to calculate backbone RMSD of proteins having two different conformations (For example 2RH1 and 1F88). With the align command it calculates the executive RMSD, but i need backbone RMSD. Please advise something. Regards *Amita *