Re: [PyMOL] How to make outlines to spheres drawn in PyMOL ?
Hi Anasuya, And for the other part of your question, check out ray_trace_color: set ray_trace_color, hotpink The thickness can be controlled with ray_trace_gain: set ray_trace_gain, 2 Hope it helps, Tsjerk On Tue, Nov 19, 2013 at 5:21 PM, Jason Vertrees < jason.vertr...@schrodinger.com> wrote: > Anasuya, > > set ray_trace_mode, 1 > > Cheers, > > -- Jason > > On Tue, Nov 19, 2013 at 12:24 AM, Anasuya Dighe > wrote: > > > > Dear users, > > I was interested in knowing if there is an option or setting in PyMOL > which is > > able to make an outline to spheres. > > I am aware of the show spheres command and have used it extensively to > show > > C-alpha atoms of amino acids as spheres. > > I am curious to know how I could make an outline to the C-alpha atoms > in a > > particular selection. Also, once the outline is made, how might I be > able to > > change the color of such an outline ? > > > > Please let me know. > > > > Thanks, > > > > Anasuya > > > > > > -- > > This message has been scanned for viruses and > > dangerous content by MailScanner, and is > > believed to be clean. > > > > > > > -- > > Shape the Mobile Experience: Free Subscription > > Software experts and developers: Be at the forefront of tech innovation. > > Intel(R) Software Adrenaline delivers strategic insight and game-changing > > conversations that shape the rapidly evolving mobile landscape. Sign up > now. > > > http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk > > ___ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > -- > Jason Vertrees, PhD > Director of Core Modeling Products > Schrödinger, Inc. > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > > > -- > Shape the Mobile Experience: Free Subscription > Software experts and developers: Be at the forefront of tech innovation. > Intel(R) Software Adrenaline delivers strategic insight and game-changing > conversations that shape the rapidly evolving mobile landscape. Sign up > now. > http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] How to make outlines to spheres drawn in PyMOL ?
Anasuya, set ray_trace_mode, 1 Cheers, -- Jason On Tue, Nov 19, 2013 at 12:24 AM, Anasuya Dighe wrote: > > Dear users, > I was interested in knowing if there is an option or setting in PyMOL which > is > able to make an outline to spheres. > I am aware of the show spheres command and have used it extensively to show > C-alpha atoms of amino acids as spheres. > I am curious to know how I could make an outline to the C-alpha atoms in a > particular selection. Also, once the outline is made, how might I be able to > change the color of such an outline ? > > Please let me know. > > Thanks, > > Anasuya > > > -- > This message has been scanned for viruses and > dangerous content by MailScanner, and is > believed to be clean. > > > -- > Shape the Mobile Experience: Free Subscription > Software experts and developers: Be at the forefront of tech innovation. > Intel(R) Software Adrenaline delivers strategic insight and game-changing > conversations that shape the rapidly evolving mobile landscape. Sign up now. > http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] How to make outlines to spheres drawn in PyMOL ?
Dear users, I was interested in knowing if there is an option or setting in PyMOL which is able to make an outline to spheres. I am aware of the show spheres command and have used it extensively to show C-alpha atoms of amino acids as spheres. I am curious to know how I could make an outline to the C-alpha atoms in a particular selection. Also, once the outline is made, how might I be able to change the color of such an outline ? Please let me know. Thanks, Anasuya -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean. -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311&iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
