Re: [PyMOL] How to show the surface border of a specific residue?

2014-07-25 Thread Ooker
Hi Jared, thanks for your efford. Just to add more information, if you have to do it many times, you'd better overlay the border by a script. You can use ImageMagick or GraphicMagick to do that. composite -gravity center overlay.png base.png base_with_border.png: See

[PyMOL] How to show the surface border of a specific residue?

2014-07-24 Thread Ooker
I have a potential map of a protein and I would like to have a border between a specific residue while the map keeps unchanged. I have thought about making a new object of the residue and tried to find a command similar to: set label_outline_color, black but I can't find one. Do you have any

Re: [PyMOL] How to show the surface border of a specific residue?

2014-07-24 Thread Sampson, Jared
Hi Ooker - As I understand it, you want to overlay a line to show which part of the surface belongs to which residue. There is currently no way to do this directly within PyMOL. However, is possible to achieve something similar using multiple layers in a composite image. See this previous