Re: [PyMOL] Is it possible to move different subunits independently using Pymol
You can translate and rotate objects using the Editing mouse mode ('Mouse'
> '3 Button Editing'). Objects can be rotated with shift-left click or
translated with shift-middle click. You can also modify just a segment by
'picking' the boundaries (command/ctrl left click). Use the 'unpick'
command to get back to moving the whole molecule.
The editing mode is pretty powerful, but not that well documented. It's
also missing undo capabilities, so save your session before attempting
anything.
-Spencer
On Mon, Nov 17, 2014 at 1:35 PM, David Hall wrote:
> also http://www.pymolwiki.org/index.php/Transform_selection
>
> and
>
> PyMOL>help rotate
>
> DESCRIPTION
>
> "rotate" rotates the atomic coordinates of atoms in a selection
> about an axis. Alternatively, it modifies the matrix associated
> with a particular object or object state.
>
> USAGE
>
> rotate axis, angle [, selection [, state [, camera [, object
> [, origin ]
>
>
>
> On Mon, Nov 17, 2014 at 7:03 AM, Tsjerk Wassenaar
> wrote:
>
>> Hey :)
>>
>> PyMOL>help translate
>>
>> DESCRIPTION
>>
>> "translate" translates the atomic coordinates of atoms in a
>> selection. Alternatively, is modifies the matrix associated with
>> a particular object or object-state.
>>
>> USAGE
>>
>> translate vector [, selection [, state [, camera [, object
>>
>> ###
>>
>> Alternatively, alter_state can be used.
>>
>> Cheers,
>>
>> Tserk
>>
>> On Mon, Nov 17, 2014 at 10:42 AM, Folmer Fredslund
>> wrote:
>>
>>> Hi Cacau,
>>>
>>> You can move objects independently of each other, but not selections
>>> inside objects AFAIK.
>>>
>>> So, you would need to *extract* or *create* new objects and then
>>> manipulate them with the editing mode.
>>>
>>> Best regards,
>>> Folmer
>>>
>>> 2014-11-17 9:57 GMT+01:00 Cacau Centurion :
>>>
Hi all,
I am wondering if it is possible to move different subunits
independently with Pymol. Can anyone let me know about it?
Yours,
Cacau
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>>>
>>>
>>>
>>> --
>>> Folmer Fredslund
>>>
>>>
>>> --
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>>>
>>
>>
>>
>> --
>> Tsjerk A. Wassenaar, Ph.D.
>>
>>
>>
>> --
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>> from Actuate! Instantly Supercharge Your Business Reports and Dashboards
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>>
>
>
>
> --
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Re: [PyMOL] Is it possible to move different subunits independently using Pymol
also http://www.pymolwiki.org/index.php/Transform_selection and PyMOL>help rotate DESCRIPTION "rotate" rotates the atomic coordinates of atoms in a selection about an axis. Alternatively, it modifies the matrix associated with a particular object or object state. USAGE rotate axis, angle [, selection [, state [, camera [, object [, origin ] On Mon, Nov 17, 2014 at 7:03 AM, Tsjerk Wassenaar wrote: > Hey :) > > PyMOL>help translate > > DESCRIPTION > > "translate" translates the atomic coordinates of atoms in a > selection. Alternatively, is modifies the matrix associated with > a particular object or object-state. > > USAGE > > translate vector [, selection [, state [, camera [, object > > ### > > Alternatively, alter_state can be used. > > Cheers, > > Tserk > > On Mon, Nov 17, 2014 at 10:42 AM, Folmer Fredslund > wrote: > >> Hi Cacau, >> >> You can move objects independently of each other, but not selections >> inside objects AFAIK. >> >> So, you would need to *extract* or *create* new objects and then >> manipulate them with the editing mode. >> >> Best regards, >> Folmer >> >> 2014-11-17 9:57 GMT+01:00 Cacau Centurion : >> >>> Hi all, >>> >>> I am wondering if it is possible to move different subunits >>> independently with Pymol. Can anyone let me know about it? >>> >>> Yours, >>> Cacau >>> >>> >>> -- >>> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server >>> from Actuate! Instantly Supercharge Your Business Reports and Dashboards >>> with Interactivity, Sharing, Native Excel Exports, App Integration & more >>> Get technology previously reserved for billion-dollar corporations, FREE >>> >>> http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk >>> ___ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >> >> >> >> -- >> Folmer Fredslund >> >> >> -- >> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server >> from Actuate! Instantly Supercharge Your Business Reports and Dashboards >> with Interactivity, Sharing, Native Excel Exports, App Integration & more >> Get technology previously reserved for billion-dollar corporations, FREE >> >> http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk >> ___ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > > > -- > Tsjerk A. Wassenaar, Ph.D. > > > > -- > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Is it possible to move different subunits independently using Pymol
Hey :) PyMOL>help translate DESCRIPTION "translate" translates the atomic coordinates of atoms in a selection. Alternatively, is modifies the matrix associated with a particular object or object-state. USAGE translate vector [, selection [, state [, camera [, object ### Alternatively, alter_state can be used. Cheers, Tserk On Mon, Nov 17, 2014 at 10:42 AM, Folmer Fredslund wrote: > Hi Cacau, > > You can move objects independently of each other, but not selections > inside objects AFAIK. > > So, you would need to *extract* or *create* new objects and then > manipulate them with the editing mode. > > Best regards, > Folmer > > 2014-11-17 9:57 GMT+01:00 Cacau Centurion : > >> Hi all, >> >> I am wondering if it is possible to move different subunits independently >> with Pymol. Can anyone let me know about it? >> >> Yours, >> Cacau >> >> >> -- >> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server >> from Actuate! Instantly Supercharge Your Business Reports and Dashboards >> with Interactivity, Sharing, Native Excel Exports, App Integration & more >> Get technology previously reserved for billion-dollar corporations, FREE >> >> http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk >> ___ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > > > -- > Folmer Fredslund > > > -- > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Is it possible to move different subunits independently using Pymol
Hi Cacau, You can move objects independently of each other, but not selections inside objects AFAIK. So, you would need to *extract* or *create* new objects and then manipulate them with the editing mode. Best regards, Folmer 2014-11-17 9:57 GMT+01:00 Cacau Centurion : > Hi all, > > I am wondering if it is possible to move different subunits independently > with Pymol. Can anyone let me know about it? > > Yours, > Cacau > > > -- > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk > ___ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Folmer Fredslund -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Is it possible to move different subunits independently using Pymol
Hi all, I am wondering if it is possible to move different subunits independently with Pymol. Can anyone let me know about it? Yours, Cacau -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
