Re: [PyMOL] Mac OS X 10.4.3

2005-11-04 Thread Brian J Goodfellow

Warren,

with 0.99beta25 the problem still exists. After loading a molecule  
there's no flickering but if I do a ray trace then the flickering  
starts when I rotate. Shifting the window stops the flickering.
By running show cartoon after loading I can also get the flickering.  
Again, moving the window stops it.


Brian

On Nov 4, 2005, at 3:40 AM, Warren DeLano wrote:


Brian,

Can you confirm that this problem exists in the very latest beta?   
I can't reproduce on my iMac G5


http://delsci.com/beta

Is there any special trick to get it to happen?

Cheers,
Warren


--
Warren L. DeLano, Ph.D.
Principal Scientist

. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942  Tech:(650)-872-0834
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. mailto:war...@delsci.com



-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Brian J Goodfellow
Sent: Thursday, November 03, 2005 2:17 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Mac OS X 10.4.3

Hi Mac users,

has anyone noticed an annoying flickering appearing when
rotating a molecule in PymolX11 and MacPyMOL under 10.4.3
that wasn't present under 10.4.2? The problem appears on both
my iBookG4 and iMacG5. If the window is moved then the
flickering disappears. However, if a ray trace is then drawn
the problem starts again until the window is moved again -
very annoying!

Brian Goodfellow


***
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Departamento de QuÌmica
Universidade de Aveiro
3810-193 Aveiro, Portugal
Tel: +351 234 401506, Fax: +351 234 370084
http://www.dq.ua.pt/ingles/index_mem.htm
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Re: [PyMOL] Mac OS X 10.4.3

2005-11-04 Thread Morri Feldman
I see the same flickering problem (iMac G5, OSX 10.4.3).  Opening as
pymol -M doesn't help.

Best,
Morri

On 11/3/05, Sabuj Pattanayek sabuj.pattana...@vanderbilt.edu wrote:
 I don't know if it will make a difference (I don't even have a Mac) but
 try opening it from a console using:

 pymol -M



--
Morri Feldman
Shokat Lab
UCSF Biophysics Graduate Program



[PyMOL] Mac OS X 10.4.3

2005-11-03 Thread Brian J Goodfellow

Hi Mac users,

has anyone noticed an annoying flickering appearing when rotating a  
molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present  
under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If  
the window is moved then the flickering disappears. However, if a ray  
trace is then drawn the problem starts again until the window is  
moved again - very annoying!


Brian Goodfellow


***
Brian J Goodfellow
Departamento de QuÌmica
Universidade de Aveiro
3810-193 Aveiro, Portugal
Tel: +351 234 401506, Fax: +351 234 370084
http://www.dq.ua.pt/ingles/index_mem.htm
***





Re: [PyMOL] Mac OS X 10.4.3

2005-11-03 Thread James Stevens
Yes, its annoying me too (powerbook G4). Flickers even with the 
MacPyMOL_beta version.

James


Dr. James Stevens
Asst. Prof., Dept. of Molecular Biology
The Scripps Research Institute
10550 North Torrey Pines Road-BCC206
La Jolla
CA 92037
USA

Tel. (858)-784-9878
Fax. (858)-784-2980
E-mail. jstev...@scripps.edu



On Thu, 3 Nov 2005, Brian J Goodfellow wrote:


Hi Mac users,

has anyone noticed an annoying flickering appearing when rotating a molecule 
in PymolX11 and MacPyMOL under 10.4.3 that wasn't present under 10.4.2? The 
problem appears on both my iBookG4 and iMacG5. If the window is moved then 
the flickering disappears. However, if a ray trace is then drawn the problem 
starts again until the window is moved again - very annoying!


Brian Goodfellow


***
Brian J Goodfellow
Departamento de QuÌmica
Universidade de Aveiro
3810-193 Aveiro, Portugal
Tel: +351 234 401506, Fax: +351 234 370084
http://www.dq.ua.pt/ingles/index_mem.htm
***




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Re: [PyMOL] Mac OS X 10.4.3

2005-11-03 Thread Serge Cohen

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Got exactly the same problem on a 800MHz TiBook
I was planning to try on a Dual G5, but had not the time today...


Serge.

Le 3 nov. 05 à 23:05, Brian J Goodfellow a écrit :


Hi Mac users,

has anyone noticed an annoying flickering appearing when rotating a  
molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present  
under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If  
the window is moved then the flickering disappears. However, if a  
ray trace is then drawn the problem starts again until the window  
is moved again - very annoying!


Brian Goodfellow




***
Dr. Serge COHEN
GPG Key ID: 9CBB58FB

N.K.I.
Department of Molecular Carcinogenesis
Plesmanlaan 121
1066 CX Amsterdam; NL

E-Mail: s.co...@nki.nl
Tel : +31 20 512 2053
***

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=F8UC
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Re: [PyMOL] Mac OS X 10.4.3

2005-11-03 Thread Sabuj Pattanayek
I don't know if it will make a difference (I don't even have a Mac) but 
try opening it from a console using:


pymol -M


Serge Cohen wrote:

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Got exactly the same problem on a 800MHz TiBook
I was planning to try on a Dual G5, but had not the time today...


Serge.

Le 3 nov. 05 à 23:05, Brian J Goodfellow a écrit :


Hi Mac users,

has anyone noticed an annoying flickering appearing when rotating a  
molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present  
under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If  
the window is moved then the flickering disappears. However, if a  ray 
trace is then drawn the problem starts again until the window  is 
moved again - very annoying!


Brian Goodfellow




***
Dr. Serge COHEN
GPG Key ID: 9CBB58FB

N.K.I.
Department of Molecular Carcinogenesis
Plesmanlaan 121
1066 CX Amsterdam; NL

E-Mail: s.co...@nki.nl
Tel : +31 20 512 2053
***

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Version: GnuPG v1.4.1 (Darwin)

iD8DBQFDapuW5EPeG5y7WPsRAlA1AJ93hPA3eALJX10AQ/HVo7J6dA914gCeMz1E
AJkFJDwrG820njkblBCpqeE=
=F8UC
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