Re: [PyMOL] Problem with Open source Pymol 2.3.0 (missing external GUI)
Hi Heng-Keat, Getting CCTBX to work with PyMOL is quite a journey. Please read: https://pymolwiki.org/index.php/CCTBX#Open-Source_PyMOL Cheers, Thomas > On Feb 14, 2019, at 11:27 AM, t...@em.uni-frankfurt.de wrote: > > Dear all, > > After I reinstalled the pmw, it ran through and now it said 'no modules named > _tkinter' as shown below: > > Warning: GL_DRAW_BUFFER0=0 -> using GL_BACK > Detected OpenGL version 3.0. Shaders available. > Geometry shaders not available > Detected GLSL version 1.30. > OpenGL graphics engine: > GL_VENDOR: Intel Open Source Technology Center > GL_RENDERER: Mesa DRI Intel(R) Haswell Mobile > GL_VERSION: 3.0 Mesa 18.2.8 > Traceback (most recent call last): > File > "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/__init__.py", > line 27, in run >from .PMGApp import PMGApp > File > "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/PMGApp.py", > line 22, in >import Pmw > File > "/home/mauricetam/software/cctbx/cctbx_plus_build/base/lib/python2.7/site-packages/Pmw.py", > line 8, in > Detected 4 CPU cores. Enabled multithreaded rendering. >import Tkinter as tkinter > File > "/home/mauricetam/software/cctbx/cctbx_plus_build/base/lib/python2.7/lib-tk/Tkinter.py", > line 39, in >import _tkinter # If this fails your Python may not be configured for Tk > ImportError: No module named _tkinter > > Thanks for the help. > > Best > HK > > Quoting t...@em.uni-frankfurt.de: > >> To whom it may concern, >> >> I installed the pymol on my machine with Ubuntu 18.04.1 LTS >> >> I have a problem with 'Qt not available, using GLUT/Tk interface' when >> install pymol with: >> >> python setup.py install --prefix=/home/mauricetam/software/pymol-2.3.0/ >> --use-msgpackc=no >> >> After I installed it with: >> >> python setup.py install --prefix=/home/mauricetam/software/pymol-2.3.0/ >> --use-msgpackc=no --glut >> >> Now, the problem is I don't see the external GUI and there is an error as >> shown below: >> >> Warning: GL_DRAW_BUFFER0=0 -> using GL_BACK >> Detected OpenGL version 3.0. Shaders available. >> Geometry shaders not available >> Detected GLSL version 1.30. >> OpenGL graphics engine: >> GL_VENDOR: Intel Open Source Technology Center >> GL_RENDERER: Mesa DRI Intel(R) Haswell Mobile >> GL_VERSION: 3.0 Mesa 18.2.2 >> Traceback (most recent call last): >> File >> "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/__init__.py", >> line 27, in run >>from .PMGApp import PMGApp >> File >> "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/PMGApp.py", >> line 22, in >>import Pmw >> ImportError: No module named Pmw >> Detected 4 CPU cores. Enabled multithreaded rendering. >> >> Any idea what is going wrong on my machine? >> >> Thank you for the help. >> >> Best >> Heng-Keat -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
Re: [PyMOL] Problem with Open source Pymol 2.3.0 (missing external GUI)
Dear all, After I reinstalled the pmw, it ran through and now it said 'no modules named _tkinter' as shown below: Warning: GL_DRAW_BUFFER0=0 -> using GL_BACK Detected OpenGL version 3.0. Shaders available. Geometry shaders not available Detected GLSL version 1.30. OpenGL graphics engine: GL_VENDOR: Intel Open Source Technology Center GL_RENDERER: Mesa DRI Intel(R) Haswell Mobile GL_VERSION: 3.0 Mesa 18.2.8 Traceback (most recent call last): File "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/__init__.py", line 27, in run from .PMGApp import PMGApp File "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/PMGApp.py", line 22, in import Pmw File "/home/mauricetam/software/cctbx/cctbx_plus_build/base/lib/python2.7/site-packages/Pmw.py", line 8, in Detected 4 CPU cores. Enabled multithreaded rendering. import Tkinter as tkinter File "/home/mauricetam/software/cctbx/cctbx_plus_build/base/lib/python2.7/lib-tk/Tkinter.py", line 39, in import _tkinter # If this fails your Python may not be configured for Tk ImportError: No module named _tkinter Thanks for the help. Best HK Quoting t...@em.uni-frankfurt.de: To whom it may concern, I installed the pymol on my machine with Ubuntu 18.04.1 LTS I have a problem with 'Qt not available, using GLUT/Tk interface' when install pymol with: python setup.py install --prefix=/home/mauricetam/software/pymol-2.3.0/ --use-msgpackc=no After I installed it with: python setup.py install --prefix=/home/mauricetam/software/pymol-2.3.0/ --use-msgpackc=no --glut Now, the problem is I don't see the external GUI and there is an error as shown below: Warning: GL_DRAW_BUFFER0=0 -> using GL_BACK Detected OpenGL version 3.0. Shaders available. Geometry shaders not available Detected GLSL version 1.30. OpenGL graphics engine: GL_VENDOR: Intel Open Source Technology Center GL_RENDERER: Mesa DRI Intel(R) Haswell Mobile GL_VERSION: 3.0 Mesa 18.2.2 Traceback (most recent call last): File "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/__init__.py", line 27, in run from .PMGApp import PMGApp File "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/PMGApp.py", line 22, in import Pmw ImportError: No module named Pmw Detected 4 CPU cores. Enabled multithreaded rendering. Any idea what is going wrong on my machine? Thank you for the help. Best Heng-Keat ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
[PyMOL] Problem with Open source Pymol 2.3.0 (missing external GUI)
To whom it may concern, I installed the pymol on my machine with Ubuntu 18.04.1 LTS I have a problem with 'Qt not available, using GLUT/Tk interface' when install pymol with: python setup.py install --prefix=/home/mauricetam/software/pymol-2.3.0/ --use-msgpackc=no After I installed it with: python setup.py install --prefix=/home/mauricetam/software/pymol-2.3.0/ --use-msgpackc=no --glut Now, the problem is I don't see the external GUI and there is an error as shown below: Warning: GL_DRAW_BUFFER0=0 -> using GL_BACK Detected OpenGL version 3.0. Shaders available. Geometry shaders not available Detected GLSL version 1.30. OpenGL graphics engine: GL_VENDOR: Intel Open Source Technology Center GL_RENDERER: Mesa DRI Intel(R) Haswell Mobile GL_VERSION: 3.0 Mesa 18.2.2 Traceback (most recent call last): File "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/__init__.py", line 27, in run from .PMGApp import PMGApp File "/home/mauricetam/software/pymol-2.3.0/lib/python2.7/site-packages/pmg_tk/PMGApp.py", line 22, in import Pmw ImportError: No module named Pmw Detected 4 CPU cores. Enabled multithreaded rendering. Any idea what is going wrong on my machine? Thank you for the help. Best Heng-Keat ___ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
Re: [PyMOL] Problem with open source pymol
Thanks, Lina. It worked beautifully. On Wed, Dec 21, 2011 at 8:14 AM, lina wrote: > If you have fink, > > you can have an alternative way of installation. > > fink install pymol-py27 > > It works well. > > On Wed, Dec 21, 2011 at 4:19 AM, Lauren Porter > wrote: > > Pymol 1.3 is still available online, but it doesn't work with any > versions > > of python greater than 2.5. If I try to install Pymol 1.4 doesn't work > when > > I install it (problems with the GLEW library). I don't understand that > > problem either. It looks like it can't find GLEW, but I know that its > path > > is included (see code below). I have never tried compiling pymol from > > source before, so I have never gotten it to work. And I reinstalled my > GLUT > > library and rebuilt, but that did not fix the crashing problem in my > > original post. Any more suggestions? Thanks! > > > > ~Lauren > > > > ... > > warning: implicit declaration of function ‘glewInit’ > > layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this > > function) > > layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported > only > > once > > layer0/ShaderMgr.c:173: error: for each function it appears in.) > > layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use > in > > this function) > > layer0/ShaderMgr.c:185: warning: implicit declaration of function > > ‘glewGetErrorString’ > > ... > > > > 2011/12/19 Troels Emtekær Linnet > >> > >> Ok, maybe I am not the right person to ask. > >> > >> But. > >> How did you get Pymol 1.3 ? > >> The one in the subversion repo is 1.4.1 > >> > >> And it looks like you have python 2.5 > >> I dont know if PyMOL needs python 2.7 > >> > >> Have you compiled before, where it worked? > >> > >> Best > >> T > >> > >> > >> Troels Emtekær Linnet > >> Slotsvej 2 > >> 4300 Holbæk > >> Mobil: +45 60210234 > >> > >> > >> > >> 2011/12/19 Lauren Porter > >>> > >>> Yes, I have GLUT installed (I'm using the framework), and I rerouted > >>> everything to make sure it was pointing to the right path. After doing > >>> that, I rebuilt and got a new error: > >>> > >>> > >>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) > >>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin > >>> Type "help", "copyright", "credits" or "license" for more information. > >>> >>> import pymol > >>> Traceback (most recent call last): > >>> File "", line 1, in > >>> File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473, > >>> in > >>> import _cmd > >>> ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, > 2): > >>> Symbol not found: _FT_Done_Face > >>> Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so > >>> Expected in: flat namespace > >>> in /Library/Python/2.5/site-packages/pymol/_cmd.so > >>> > >>> > >>> > >>> I read that this is because of a problem with the freetype 2 library, > but > >>> I included the library's path in the setup file, so I have no idea > what else > >>> to do. Any ideas? Thanks! > >>> > >>> ~Lauren > >>> > >>> > >>> 2011/12/19 Troels Emtekær Linnet > > 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to > uncaught exception 'NSInvalidArgumentException', reason: > '-[GLUTApplication > _setup:]: unrecognized > -- > > > Do you have glut installed ? > > http://www.pymolwiki.org/index.php/Linux_Install#Requirements > > freeglut3-dev > > > Best > Troels > > > > 2011/12/19 Lauren Porter > > > > Hi Everyone, > > > >I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running > > Snow Leopard), but pymol keeps crashing. The compilation looks > clean, so I > > have no idea why it's giving me trouble. I have pasted the details > below. > > Any help would be much appreciated. Thanks! > > > > ~Lauren > > > > Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) > > [GCC 4.2.1 (Apple Inc. build 5646)] on darwin > > Type "help", "copyright", "credits" or "license" for more > information. > > >>> import pymol > > >>> pymol.finish_launching() > > >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication > > >>> _setup:]: unrecognized selector sent to instance 0x1805490 > > 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was > > raised > > 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: > > unrecognized selector sent to instance 0x1805490 > > selector sent to instance 0x1805490' > > *** Call stack at first throw: > > ( > > 0 CoreFoundation 0x906e36ca __raiseError + > > 410 > > 1 libobjc.A.dylib 0x990c15a9 > > objc_exception_throw + 56 > > 2 CoreFoundation 0x9073090b > > -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 > > 3 CoreFoundation
Re: [PyMOL] Problem with open source pymol
If you have fink, you can have an alternative way of installation. fink install pymol-py27 It works well. On Wed, Dec 21, 2011 at 4:19 AM, Lauren Porter wrote: > Pymol 1.3 is still available online, but it doesn't work with any versions > of python greater than 2.5. If I try to install Pymol 1.4 doesn't work when > I install it (problems with the GLEW library). I don't understand that > problem either. It looks like it can't find GLEW, but I know that its path > is included (see code below). I have never tried compiling pymol from > source before, so I have never gotten it to work. And I reinstalled my GLUT > library and rebuilt, but that did not fix the crashing problem in my > original post. Any more suggestions? Thanks! > > ~Lauren > > ... > warning: implicit declaration of function ‘glewInit’ > layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this > function) > layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported only > once > layer0/ShaderMgr.c:173: error: for each function it appears in.) > layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use in > this function) > layer0/ShaderMgr.c:185: warning: implicit declaration of function > ‘glewGetErrorString’ > ... > > 2011/12/19 Troels Emtekær Linnet >> >> Ok, maybe I am not the right person to ask. >> >> But. >> How did you get Pymol 1.3 ? >> The one in the subversion repo is 1.4.1 >> >> And it looks like you have python 2.5 >> I dont know if PyMOL needs python 2.7 >> >> Have you compiled before, where it worked? >> >> Best >> T >> >> >> Troels Emtekær Linnet >> Slotsvej 2 >> 4300 Holbæk >> Mobil: +45 60210234 >> >> >> >> 2011/12/19 Lauren Porter >>> >>> Yes, I have GLUT installed (I'm using the framework), and I rerouted >>> everything to make sure it was pointing to the right path. After doing >>> that, I rebuilt and got a new error: >>> >>> >>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) >>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin >>> Type "help", "copyright", "credits" or "license" for more information. >>> >>> import pymol >>> Traceback (most recent call last): >>> File "", line 1, in >>> File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473, >>> in >>> import _cmd >>> ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, 2): >>> Symbol not found: _FT_Done_Face >>> Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so >>> Expected in: flat namespace >>> in /Library/Python/2.5/site-packages/pymol/_cmd.so >>> >>> >>> >>> I read that this is because of a problem with the freetype 2 library, but >>> I included the library's path in the setup file, so I have no idea what else >>> to do. Any ideas? Thanks! >>> >>> ~Lauren >>> >>> >>> 2011/12/19 Troels Emtekær Linnet 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '-[GLUTApplication _setup:]: unrecognized -- Do you have glut installed ? http://www.pymolwiki.org/index.php/Linux_Install#Requirements freeglut3-dev Best Troels 2011/12/19 Lauren Porter > > Hi Everyone, > > I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running > Snow Leopard), but pymol keeps crashing. The compilation looks clean, so > I > have no idea why it's giving me trouble. I have pasted the details below. > Any help would be much appreciated. Thanks! > > ~Lauren > > Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) > [GCC 4.2.1 (Apple Inc. build 5646)] on darwin > Type "help", "copyright", "credits" or "license" for more information. > >>> import pymol > >>> pymol.finish_launching() > >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication > >>> _setup:]: unrecognized selector sent to instance 0x1805490 > 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was > raised > 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: > unrecognized selector sent to instance 0x1805490 > selector sent to instance 0x1805490' > *** Call stack at first throw: > ( > 0 CoreFoundation 0x906e36ca __raiseError + > 410 > 1 libobjc.A.dylib 0x990c15a9 > objc_exception_throw + 56 > 2 CoreFoundation 0x9073090b > -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 > 3 CoreFoundation 0x90689c06 ___forwarding___ > + 950 > 4 CoreFoundation 0x906897d2 > _CF_forwarding_prep_0 + 50 > 5 Tk 0x17e11ea8 TkpInit + 601 > 6 Tk 0x17d7d60a > Tk_PkgInitStubsCheck + 2489 > 7 _tkinter.so 0x01d9a
Re: [PyMOL] Problem with open source pymol
Pymol 1.3 is still available online, but it doesn't work with any versions of python greater than 2.5. If I try to install Pymol 1.4 doesn't work when I install it (problems with the GLEW library). I don't understand that problem either. It looks like it can't find GLEW, but I know that its path is included (see code below). I have never tried compiling pymol from source before, so I have never gotten it to work. And I reinstalled my GLUT library and rebuilt, but that did not fix the crashing problem in my original post. Any more suggestions? Thanks! ~Lauren ... warning: implicit declaration of function ‘glewInit’ layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this function) layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported only once layer0/ShaderMgr.c:173: error: for each function it appears in.) layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use in this function) layer0/ShaderMgr.c:185: warning: implicit declaration of function ‘glewGetErrorString’ ... 2011/12/19 Troels Emtekær Linnet > Ok, maybe I am not the right person to ask. > > But. > How did you get Pymol 1.3 ? > The one in the subversion repo is 1.4.1 > > And it looks like you have python 2.5 > I dont know if PyMOL needs python 2.7 > > Have you compiled before, where it worked? > > Best > T > > > Troels Emtekær Linnet > Slotsvej 2 > 4300 Holbæk > Mobil: +45 60210234 > > > > 2011/12/19 Lauren Porter > >> Yes, I have GLUT installed (I'm using the framework), and I rerouted >> everything to make sure it was pointing to the right path. After doing >> that, I rebuilt and got a new error: >> >> >> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) >> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin >> Type "help", "copyright", "credits" or "license" for more information. >> >>> import pymol >> Traceback (most recent call last): >> File "", line 1, in >> File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473, >> in >> import _cmd >> ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, 2): >> Symbol not found: _FT_Done_Face >> Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so >> Expected in: flat namespace >> in /Library/Python/2.5/site-packages/pymol/_cmd.so >> >> >> >> I read that this is because of a problem with the freetype 2 library, but >> I included the library's path in the setup file, so I have no idea what >> else to do. Any ideas? Thanks! >> >> ~Lauren >> >> >> 2011/12/19 Troels Emtekær Linnet >> >>> 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to >>> uncaught exception 'NSInvalidArgumentException', reason*: >>> '-[GLUTApplication _setup:]:* unrecognized >>> -- >>> >>> >>> Do you have glut installed ? >>> >>> http://www.pymolwiki.org/index.php/Linux_Install#Requirements >>> >>> freeglut3-dev >>> >>> >>> Best >>> Troels >>> >>> >>> >>> 2011/12/19 Lauren Porter >>> Hi Everyone, I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running Snow Leopard), but pymol keeps crashing. The compilation looks clean, so I have no idea why it's giving me trouble. I have pasted the details below. Any help would be much appreciated. Thanks! ~Lauren Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) [GCC 4.2.1 (Apple Inc. build 5646)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> import pymol >>> pymol.finish_launching() >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was raised 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490 selector sent to instance 0x1805490' *** Call stack at first throw: ( 0 CoreFoundation 0x906e36ca __raiseError + 410 1 libobjc.A.dylib 0x990c15a9 objc_exception_throw + 56 2 CoreFoundation 0x9073090b -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 3 CoreFoundation 0x90689c06 ___forwarding___ + 950 4 CoreFoundation 0x906897d2 _CF_forwarding_prep_0 + 50 5 Tk 0x17e11ea8 TkpInit + 601 6 Tk 0x17d7d60a Tk_PkgInitStubsCheck + 2489 7 _tkinter.so 0x01d9afe8 Tcl_AppInit + 130 8 _tkinter.so 0x01d9af09 var_perform + 2295 9 Python 0x0007ad4d PyEval_EvalFrameEx + 16241 10 Python 0x0007cac6 PyEval_EvalCodeEx + 1734 11 Python
Re: [PyMOL] Problem with open source pymol
Yes, I have GLUT installed (I'm using the framework), and I rerouted everything to make sure it was pointing to the right path. After doing that, I rebuilt and got a new error: Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) [GCC 4.2.1 (Apple Inc. build 5646)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> import pymol Traceback (most recent call last): File "", line 1, in File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473, in import _cmd ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, 2): Symbol not found: _FT_Done_Face Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so Expected in: flat namespace in /Library/Python/2.5/site-packages/pymol/_cmd.so I read that this is because of a problem with the freetype 2 library, but I included the library's path in the setup file, so I have no idea what else to do. Any ideas? Thanks! ~Lauren 2011/12/19 Troels Emtekær Linnet > 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to > uncaught exception 'NSInvalidArgumentException', reason*: > '-[GLUTApplication _setup:]:* unrecognized > -- > > > Do you have glut installed ? > > http://www.pymolwiki.org/index.php/Linux_Install#Requirements > > freeglut3-dev > > > Best > Troels > > > > 2011/12/19 Lauren Porter > >> Hi Everyone, >> >>I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running Snow >> Leopard), but pymol keeps crashing. The compilation looks clean, so I have >> no idea why it's giving me trouble. I have pasted the details below. Any >> help would be much appreciated. Thanks! >> >> ~Lauren >> >> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) >> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin >> Type "help", "copyright", "credits" or "license" for more information. >> >>> import pymol >> >>> pymol.finish_launching() >> >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication _setup:]: >> unrecognized selector sent to instance 0x1805490 >> 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was raised >> 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: >> unrecognized selector sent to instance 0x1805490 >> selector sent to instance 0x1805490' >> *** Call stack at first throw: >> ( >> 0 CoreFoundation 0x906e36ca __raiseError + 410 >> 1 libobjc.A.dylib 0x990c15a9 >> objc_exception_throw + 56 >> 2 CoreFoundation 0x9073090b >> -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 >> 3 CoreFoundation 0x90689c06 ___forwarding___ + >> 950 >> 4 CoreFoundation 0x906897d2 >> _CF_forwarding_prep_0 + 50 >> 5 Tk 0x17e11ea8 TkpInit + 601 >> 6 Tk 0x17d7d60a >> Tk_PkgInitStubsCheck + 2489 >> 7 _tkinter.so 0x01d9afe8 Tcl_AppInit + 130 >> 8 _tkinter.so 0x01d9af09 var_perform + 2295 >> 9 Python 0x0007ad4d PyEval_EvalFrameEx >> + 16241 >> 10 Python 0x0007cac6 PyEval_EvalCodeEx >> + 1734 >> 11 Python 0x000274ce PyClassMethod_New >> + 2213 >> 12 Python 0xc2a8 PyObject_Call + 50 >> 13 Python 0x00015db7 PyClass_New + 1710 >> 14 Python 0xc2a8 PyObject_Call + 50 >> 15 Python 0x00076130 >> PyEval_CallObjectWithKeywords + 211 >> 16 Python 0x0001566f PyInstance_New + >> 330 >> 17 Python 0xc2a8 PyObject_Call + 50 >> 18 Python 0x0007c332 PyEval_EvalFrameEx >> + 21846 >> 19 Python 0x0007cac6 PyEval_EvalCodeEx >> + 1734 >> 20 Python 0x000274ce PyClassMethod_New >> + 2213 >> 21 Python 0xc2a8 PyObject_Call + 50 >> 22 Python 0x00015db7 PyClass_New + 1710 >> 23 Python 0xc2a8 PyObject_Call + 50 >> 24 Python 0x00076130 >> PyEval_CallObjectWithKeywords + 211 >> 25 Python 0x0001566f PyInstance_New + >> 330 >> 26 Python 0xc2a8 PyObject_Call + 50 >> 27 Python 0x0007c332 PyEval_EvalFrameEx >> + 21846 >> 28 Python 0x0007cac6 PyEval_EvalCodeEx >> + 1734 >> 29 Python 0x00027461 PyClassMethod_New >> + 2104 >> 30 Python 0xc2a8 PyObject_Call + 50 >> 31 Python 0x0007c363 PyEval_EvalF
Re: [PyMOL] Problem with open source pymol
2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason*: '-[GLUTApplication _setup:]:* unrecognized -- Do you have glut installed ? http://www.pymolwiki.org/index.php/Linux_Install#Requirements freeglut3-dev Best Troels 2011/12/19 Lauren Porter > Hi Everyone, > >I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running Snow > Leopard), but pymol keeps crashing. The compilation looks clean, so I have > no idea why it's giving me trouble. I have pasted the details below. Any > help would be much appreciated. Thanks! > > ~Lauren > > Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) > [GCC 4.2.1 (Apple Inc. build 5646)] on darwin > Type "help", "copyright", "credits" or "license" for more information. > >>> import pymol > >>> pymol.finish_launching() > >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication _setup:]: > unrecognized selector sent to instance 0x1805490 > 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was raised > 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: > unrecognized selector sent to instance 0x1805490 > selector sent to instance 0x1805490' > *** Call stack at first throw: > ( > 0 CoreFoundation 0x906e36ca __raiseError + 410 > 1 libobjc.A.dylib 0x990c15a9 > objc_exception_throw + 56 > 2 CoreFoundation 0x9073090b > -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 > 3 CoreFoundation 0x90689c06 ___forwarding___ + > 950 > 4 CoreFoundation 0x906897d2 > _CF_forwarding_prep_0 + 50 > 5 Tk 0x17e11ea8 TkpInit + 601 > 6 Tk 0x17d7d60a > Tk_PkgInitStubsCheck + 2489 > 7 _tkinter.so 0x01d9afe8 Tcl_AppInit + 130 > 8 _tkinter.so 0x01d9af09 var_perform + 2295 > 9 Python 0x0007ad4d PyEval_EvalFrameEx > + 16241 > 10 Python 0x0007cac6 PyEval_EvalCodeEx + > 1734 > 11 Python 0x000274ce PyClassMethod_New + > 2213 > 12 Python 0xc2a8 PyObject_Call + 50 > 13 Python 0x00015db7 PyClass_New + 1710 > 14 Python 0xc2a8 PyObject_Call + 50 > 15 Python 0x00076130 > PyEval_CallObjectWithKeywords + 211 > 16 Python 0x0001566f PyInstance_New + 330 > 17 Python 0xc2a8 PyObject_Call + 50 > 18 Python 0x0007c332 PyEval_EvalFrameEx > + 21846 > 19 Python 0x0007cac6 PyEval_EvalCodeEx + > 1734 > 20 Python 0x000274ce PyClassMethod_New + > 2213 > 21 Python 0xc2a8 PyObject_Call + 50 > 22 Python 0x00015db7 PyClass_New + 1710 > 23 Python 0xc2a8 PyObject_Call + 50 > 24 Python 0x00076130 > PyEval_CallObjectWithKeywords + 211 > 25 Python 0x0001566f PyInstance_New + 330 > 26 Python 0xc2a8 PyObject_Call + 50 > 27 Python 0x0007c332 PyEval_EvalFrameEx > + 21846 > 28 Python 0x0007cac6 PyEval_EvalCodeEx + > 1734 > 29 Python 0x00027461 PyClassMethod_New + > 2104 > 30 Python 0xc2a8 PyObject_Call + 50 > 31 Python 0x0007c363 PyEval_EvalFrameEx > + 21895 > 32 Python 0x0007aedc PyEval_EvalFrameEx > + 16640 > 33 Python 0x0007aedc PyEval_EvalFrameEx > + 16640 > 34 Python 0x0007cac6 PyEval_EvalCodeEx + > 1734 > 35 Python 0x000274ce PyClassMethod_New + > 2213 > 36 Python 0xc2a8 PyObject_Call + 50 > 37 Python 0x00015db7 PyClass_New + 1710 > 38 Python 0xc2a8 PyObject_Call + 50 > 39 Python 0x00076130 > PyEval_CallObjectWithKeywords + 211 > 40 Python 0x000a3edf initthread + 1756 > 41 libSystem.B.dylib 0x91446259 _pthread_start + 345 > 42 libSystem.B.dylib 0x914460de thread_start + 34 > ) > Trace/BPT trap > > > > -- > Learn Windows Azure Live! Tuesday, Dec 13, 2011 > Microsoft is holding a specia
[PyMOL] Problem with open source pymol
Hi Everyone, I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running Snow Leopard), but pymol keeps crashing. The compilation looks clean, so I have no idea why it's giving me trouble. I have pasted the details below. Any help would be much appreciated. Thanks! ~Lauren Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) [GCC 4.2.1 (Apple Inc. build 5646)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> import pymol >>> pymol.finish_launching() >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was raised 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '-[GLUTApplication _setup:]: unrecognized selector sent to instance 0x1805490' *** Call stack at first throw: ( 0 CoreFoundation 0x906e36ca __raiseError + 410 1 libobjc.A.dylib 0x990c15a9 objc_exception_throw + 56 2 CoreFoundation 0x9073090b -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 3 CoreFoundation 0x90689c06 ___forwarding___ + 950 4 CoreFoundation 0x906897d2 _CF_forwarding_prep_0 + 50 5 Tk 0x17e11ea8 TkpInit + 601 6 Tk 0x17d7d60a Tk_PkgInitStubsCheck + 2489 7 _tkinter.so 0x01d9afe8 Tcl_AppInit + 130 8 _tkinter.so 0x01d9af09 var_perform + 2295 9 Python 0x0007ad4d PyEval_EvalFrameEx + 16241 10 Python 0x0007cac6 PyEval_EvalCodeEx + 1734 11 Python 0x000274ce PyClassMethod_New + 2213 12 Python 0xc2a8 PyObject_Call + 50 13 Python 0x00015db7 PyClass_New + 1710 14 Python 0xc2a8 PyObject_Call + 50 15 Python 0x00076130 PyEval_CallObjectWithKeywords + 211 16 Python 0x0001566f PyInstance_New + 330 17 Python 0xc2a8 PyObject_Call + 50 18 Python 0x0007c332 PyEval_EvalFrameEx + 21846 19 Python 0x0007cac6 PyEval_EvalCodeEx + 1734 20 Python 0x000274ce PyClassMethod_New + 2213 21 Python 0xc2a8 PyObject_Call + 50 22 Python 0x00015db7 PyClass_New + 1710 23 Python 0xc2a8 PyObject_Call + 50 24 Python 0x00076130 PyEval_CallObjectWithKeywords + 211 25 Python 0x0001566f PyInstance_New + 330 26 Python 0xc2a8 PyObject_Call + 50 27 Python 0x0007c332 PyEval_EvalFrameEx + 21846 28 Python 0x0007cac6 PyEval_EvalCodeEx + 1734 29 Python 0x00027461 PyClassMethod_New + 2104 30 Python 0xc2a8 PyObject_Call + 50 31 Python 0x0007c363 PyEval_EvalFrameEx + 21895 32 Python 0x0007aedc PyEval_EvalFrameEx + 16640 33 Python 0x0007aedc PyEval_EvalFrameEx + 16640 34 Python 0x0007cac6 PyEval_EvalCodeEx + 1734 35 Python 0x000274ce PyClassMethod_New + 2213 36 Python 0xc2a8 PyObject_Call + 50 37 Python 0x00015db7 PyClass_New + 1710 38 Python 0xc2a8 PyObject_Call + 50 39 Python 0x00076130 PyEval_CallObjectWithKeywords + 211 40 Python 0x000a3edf initthread + 1756 41 libSystem.B.dylib 0x91446259 _pthread_start + 345 42 libSystem.B.dylib 0x914460de thread_start + 34 ) Trace/BPT trap -- Learn Windows Azure Live! Tuesday, Dec 13, 2011 Microsoft is holding a special Learn Windows Azure training event for developers. It will provide a great way to learn Windows Azure and what it provides. You can attend the event by watching it streamed LIVE online. Learn more at http://p.sf.net/sfu/ms-windowsazure___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourcefo
