Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-20 Thread Jason Vertrees
Hi David, If you save a session file in the latest version of PyMOL there is never the expectation that prior versions can read that file. Such forward compatibility (of the older versions) is not supported. We do support, however, backward compatibility which is when newer versions of PyMOL read

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-20 Thread Robert Hanson
(yes, I meant forward compatibility there) Jason, in our 100+ PyMOL session files that we can now read into Jmol we have a few files that don't seem to have backward compatibility to PyMOL 1.3 from the open source version 1.6.0.0. Mostly it has to do with CGOs and measurements. Should I just send

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-20 Thread Jason Vertrees
Bob, Sure, feel free to send those to Thomas. Cheers, -- Jason On Thu, Jun 20, 2013 at 9:06 AM, Robert Hanson hans...@stolaf.edu wrote: (yes, I meant forward compatibility there) Jason, in our 100+ PyMOL session files that we can now read into Jmol we have a few files that don't seem to

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-19 Thread David Hall
I still have this problem: session saved in 1.6 with a black background; opens in 1.5 (and earlier) with a red background Many of my collaborators use old versions of pymol, frequently installed onto their machines when they were bought X years ago, and this essentially makes it so I cannot use

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-19 Thread Robert Hanson
That would be a problem with all programs -- unless there is a SAVE mode that is compatible with version (as, for example, MS Word has). One cannot expect backward compatibility, I think. Bob Hanson On Wed, Jun 19, 2013 at 4:18 PM, David Hall li...@cowsandmilk.net wrote: I still have

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-18 Thread Thomas Holder
This is fixed in SVN rev 4032. Cheers, Thomas Thomas Holder wrote, On 06/15/13 10:45: Hi Rob, this has not been fixed yet, I'm really sorry. We'll look into this ASAP. It only affects the open-source code, apparently we missed something when syncing with the incentive codebase.

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-15 Thread Thomas Holder
Hi Rob, this has not been fixed yet, I'm really sorry. We'll look into this ASAP. It only affects the open-source code, apparently we missed something when syncing with the incentive codebase. Cheers, Thomas On Jun 14, 2013, at 9:23 PM, Robert Campbell robert.campb...@queensu.ca wrote:

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-14 Thread Robert Campbell
Hello Thomas and David, Was there any resolution of this? I've just compiled the latest version from SVN and I have the same problem opening files created under version 1.5.0. This is on Debian testing (32-bit). Cheers, Rob On Fri, 2013-04-26 19:15 EDT, David Hall li...@cowsandmilk.net

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Michael Banck
Hi, On Sun, Mar 24, 2013 at 11:02:08AM +0100, Thomas Holder wrote: The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes and improvements, this version should complete the transition to shader-based rendering for all

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Christoph Gohlke
On 3/24/2013 3:02 AM, Thomas Holder wrote: Dear PyMOL users, The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes and improvements, this version should complete the transition to shader-based rendering for all

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Stephen P. Molnar
On Sun, 24 Mar 2013 11:02:08 +0100 Thomas Holder thomas.hol...@schrodinger.com wrote: Dear PyMOL users, The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes and improvements, this version should complete the

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Michael Banck
Hi Stephen, On Mon, Mar 25, 2013 at 01:33:16PM -0400, Stephen P. Molnar wrote: On Sun, 24 Mar 2013 11:02:08 +0100 Thomas Holder thomas.hol...@schrodinger.com wrote: The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Stephen P. Molnar
On Mon, 25 Mar 2013 18:47:27 +0100 Michael Banck mba...@debian.org wrote: Hi Stephen, On Mon, Mar 25, 2013 at 01:33:16PM -0400, Stephen P. Molnar wrote: On Sun, 24 Mar 2013 11:02:08 +0100 Thomas Holder thomas.hol...@schrodinger.com wrote: The pre-release version of PyMOL 1.6 has been

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-25 Thread Thomas Holder
Hi Christoph, thanks a lot for the patches. Regarding your suggestion for pymol.bat: I guess this will not work if you install with a custom prefix, since you make assumptions where to find pythonw.exe and the pymol module. I suggest to discuss this off-list, since it's quite specific. Cheers,

[PyMOL] PyMOL 1.6 pre-release announcement

2013-03-24 Thread Thomas Holder
Dear PyMOL users, The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes and improvements, this version should complete the transition to shader-based rendering for all on-screen drawing. For non-integrated chipsets this

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-24 Thread Michael Banck
Hi, On Sun, Mar 24, 2013 at 11:02:08AM +0100, Thomas Holder wrote: The pre-release version of PyMOL 1.6 has been pushed to the open source repository on SourceForge. Besides several minor fixes and improvements, this version should complete the transition to shader-based rendering for all

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-03-24 Thread Thomas Holder
Hi Michael, I haven't tagged that commit. It's svn revision 4025. For the final 1.6.0 version we will upload a tar.gz archive to sourceforge. Cheers, Thomas On Mar 24, 2013, at 1:18 PM, Michael Banck mba...@debian.org wrote: Hi, On Sun, Mar 24, 2013 at 11:02:08AM +0100, Thomas Holder